Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L08
(1191 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 129 2e-29
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 129 2e-29
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 129 2e-29
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 129 2e-29
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 32 4.7
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 32 4.7
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 32 4.7
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 32 4.7
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 32 4.7
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 32 4.7
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 32 4.7
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 32 4.7
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 129 bits (312), Expect = 2e-29
Identities = 67/103 (65%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +1
Query: 178 MSLGVPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEH 357
MS+GVP+ VLH A GH+V C TN G V G LIEAE CQM +TVTY GRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 358 VYIRGSKXXFLILPDMLKXAPMFKXQGNK---PTAGRGKSAIL 477
VYIRGSK FLILPDMLK APM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 129 bits (312), Expect = 2e-29
Identities = 67/103 (65%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +1
Query: 178 MSLGVPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEH 357
MS+GVP+ VLH A GH+V C TN G V G LIEAE CQM +TVTY GRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 358 VYIRGSKXXFLILPDMLKXAPMFKXQGNK---PTAGRGKSAIL 477
VYIRGSK FLILPDMLK APM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 129 bits (312), Expect = 2e-29
Identities = 67/103 (65%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +1
Query: 178 MSLGVPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEH 357
MS+GVP+ VLH A GH+V C TN G V G LIEAE CQM +TVTY GRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 358 VYIRGSKXXFLILPDMLKXAPMFKXQGNK---PTAGRGKSAIL 477
VYIRGSK FLILPDMLK APM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 129 bits (312), Expect = 2e-29
Identities = 67/103 (65%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +1
Query: 178 MSLGVPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEH 357
MS+GVP+ VLH A GH+V C TN G V G LIEAE CQM +TVTY GRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 358 VYIRGSKXXFLILPDMLKXAPMFKXQGNK---PTAGRGKSAIL 477
VYIRGSK FLILPDMLK APM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 31.9 bits (69), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 190 VPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXG-RVAQLEHVYI 366
+PL +L A H + G +G L+ + + V T G + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 367 RGSKXXFLILPDMLKXAPMFKXQGNKPTAGRG 462
RGS +L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPD--EIIDMVKEEVVAKGRGRG 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,574,004
Number of Sequences: 237096
Number of extensions: 2252474
Number of successful extensions: 6830
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6830
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16734053920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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