Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L08
         (1191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    92   6e-19
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    71   2e-12
AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine re...    29   4.9  

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 92.3 bits (219), Expect = 6e-19
 Identities = 45/86 (52%), Positives = 56/86 (65%)
 Frame = +1

Query: 181 SLGVPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEHV 360
           S+GVP+ +LH A GH+V   T  G V  G L EAE    CQ+    VT+  GR  QL++V
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62

Query: 361 YIRGSKXXFLILPDMLKXAPMFKXQG 438
           +IRG+K  F+ILPDMLK APMFK  G
Sbjct: 63  FIRGNKIRFMILPDMLKNAPMFKNIG 88


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 35/69 (50%), Positives = 43/69 (62%)
 Frame = +1

Query: 223 HVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEHVYIRGSKXXFLILPD 402
           H+V   T  G V  G L EAE    CQ+    VT+  GR  QL++V+IRG+K  F+ILPD
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPD 62

Query: 403 MLKXAPMFK 429
           MLK AP FK
Sbjct: 63  MLKNAPXFK 71


>AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein53 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 650 YILIYLSEKNTNFGNRTKIIIMFVQRLLLCSKM*Q*GPVPDFLFFYFGHPSICFTHLRSH 829
           ++ +  SEK+ NFGN   +++ F    L+ S +    P+    + Y      CF  +R H
Sbjct: 25  FVYLIFSEKSANFGNYRFLLLSFAVFNLIYSVVNVLVPLDIHSYGY-----CCFLTVR-H 78

Query: 830 GPFDQI 847
           GPF ++
Sbjct: 79  GPFSEV 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,536,182
Number of Sequences: 27780
Number of extensions: 343148
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)