Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L04
         (1197 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.64 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    26   0.64 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +3

Query: 513 NYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNS 692
           ++H    +K+  +T+G  +L+  G + V I    F FT+ + Q  E Y +S    +  N 
Sbjct: 509 HHHLSKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFTANV-QAGELYFMSLLNPILSNV 567

Query: 693 KVTRDSVGFC 722
               D V  C
Sbjct: 568 TFVIDVVYVC 577


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +3

Query: 513 NYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNS 692
           ++H    +K+  +T+G  +L+  G + V I    F FT+ + Q  E Y +S    +  N 
Sbjct: 234 HHHLSKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFTANV-QAGELYFMSLLNPILSNV 292

Query: 693 KVTRDSVGFC 722
               D V  C
Sbjct: 293 TFVIDVVYVC 302


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 202  LATYLMLQRCMRQWNLIIASKSIVNIKLGRI 294
            L T++M Q C+   ++I A   +VN ++G I
Sbjct: 1249 LITFVMSQHCVELVSMIKARFVVVNQQIGGI 1279


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,021
Number of Sequences: 336
Number of extensions: 4751
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34835979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)