Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L04
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    36   0.011

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
 Frame = +3

Query: 522 YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKVT 701
           YY+EI++L+   G +  +GVG  + ++   +     L G   ES+G       + N   T
Sbjct: 114 YYYEIQILSR--GKEGKMGVGFCRKSMQTNR-----LPGCTAESWGYHGNSGEKFNCSKT 166

Query: 702 RDSVG--FCRGTIIGVRVDLWNGTLEFYVNREPQGIAFYNLRRHQVLFPMI 848
            ++ G  F  G IIG  V+  N T+ +  N    G+AF  +    VL+P+I
Sbjct: 167 GEAYGPEFTTGDIIGCGVNFINRTIFYTKNGAYLGVAFKKV--SDVLYPVI 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,896,420
Number of Sequences: 5004
Number of extensions: 76093
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)