Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L04
         (1197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    33   0.59 
09_04_0025 - 13882424-13882657                                         31   1.4  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    31   1.8  
01_06_0355 + 28657833-28660665,28660762-28661126                       29   7.2  
11_03_0099 - 9983044-9983052,9983145-9983939,9984031-9984301,998...    29   9.6  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    29   9.6  
02_05_1026 - 33598275-33599561                                         29   9.6  

>07_03_1345 +
           25919379-25920866,25921342-25921962,25922733-25922893,
           25923284-25923422,25923509-25923592,25923944-25923982,
           25924037-25924222,25924347-25924478,25924810-25925009,
           25925294-25925498,25925618-25925944
          Length = 1193

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +3

Query: 615 FTFTSLIGQDEESYGLSYTGAVRHNSKVTRDSVGFCRGTIIGVRVDLWNGTLEFYVNREP 794
           FT    +G  ++SY        + N+   +    +  G +IG  ++L  G + FY N   
Sbjct: 171 FTDQKGVGDSDDSYAFDGRRVTKWNNDPEQYGQMWAVGDVIGCCINLDAGEISFYRNGNF 230

Query: 795 QGIAFYNLRR 824
            G+AF  +R+
Sbjct: 231 LGVAFDGIRK 240


>09_04_0025 - 13882424-13882657
          Length = 77

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +2

Query: 878  ADLRSVVAGLAARRLGQDPGRLRQEQXPDASETAAWSLAXPEGXN-----SG*PC 1027
            A L + VA  AARRLG+D G  RQ+  P  S + A S   P G +     SG PC
Sbjct: 19   ASLNAGVAVAAARRLGEDGGGRRQQPPPLVSVSKASS--GPSGCSNDPHISGRPC 71


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -2

Query: 974  FRTHQXPVLDGGGQDLGRVDEQRGLPRRCVDQLHARLGRG*ADHREQDLVTTEIVERYTL 795
            F+  +    +GGG    +  EQ+    RC D + A L     + R     T E+ ++  L
Sbjct: 1960 FQVCRRQAYEGGGGSKAQPSEQKAAAARCADDVRALLFGMMLEQRACSRATVEMEQQRLL 2019

Query: 794  RLTVDVKLQRSIPQVDPD 741
             + + V     +P + P+
Sbjct: 2020 LVALPVGFASHMPTMPPN 2037


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 510 HNYHYYWEIKMLTDTYGTDILIGVGS-NKV---NISDPQFTFTSLIGQDEESYGLSY 668
           H    Y+E+   T+ + +D L+G GS  KV   N+ D Q     ++  D E   +S+
Sbjct: 759 HRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSF 815


>11_03_0099 -
           9983044-9983052,9983145-9983939,9984031-9984301,
           9984857-9985056
          Length = 424

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 NNTNN*INGTFKENHCFY 120
           NN N+ ING FK+N C++
Sbjct: 163 NNLNDSINGNFKKNDCYW 180


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 468 SSGTAVVRGNCPMIHNYH-YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQD 644
           + G  +   N    H +H +Y   K L   +GT +L   G NK++  D    F  +I  D
Sbjct: 173 NGGLEIKHDNDAGKHFFHQHYGSTKPLISFFGTKLLSDKGVNKLSEDDVLRCFMVIIYLD 232

Query: 645 EESYGL 662
            + +G+
Sbjct: 233 FKDFGI 238


>02_05_1026 - 33598275-33599561
          Length = 428

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 293 IRPSLIFTIDLLAIIRFHCRIHLCNIRYVAKTHNSK 186
           I PS++F + +LAI+ F C +    +R++ + H  +
Sbjct: 31  ISPSIVFIVAVLAIVFFVCGLLHLLVRHLLRLHRQR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,485,914
Number of Sequences: 37544
Number of extensions: 536213
Number of successful extensions: 1605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)