Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L03
(1259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 37 0.007
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 34 0.048
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.063
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 30 0.59
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.59
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.77
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe... 29 1.4
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 29 1.8
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 28 2.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 2.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 2.4
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 3.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 3.1
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 3.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 3.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 3.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 3.1
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 4.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 4.1
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 5.5
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 7.2
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 7.2
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 27 7.2
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 9.5
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 9.5
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 9.5
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 9.5
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 36.7 bits (81), Expect = 0.007
Identities = 31/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Frame = +2
Query: 446 LFKPYLEAIQKDKEQKMQQELKRE---EEERSRIELQNRVMLEKQKQQSNKITEEQQVQR 616
+ + Y E + + ++ K+ +E++ E ++ER +++ + +K+Q EE++ +R
Sbjct: 556 VLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRR 615
Query: 617 IKDALNAQTYDQFLQYAQQQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILN 796
+ L Q + L+ A++Q ++ +++ Q++ Q+ +Q +++
Sbjct: 616 EAERLAEQAAQKALE-AKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKER--E 672
Query: 797 ESGDTESENVKKEEMVKDCNLNETDVVAVV-DNKSMQTLXKTDPNDYTEVYKEDESED 967
+ + + +E+M ++ L E + ++ + K + L K + E ESE+
Sbjct: 673 KKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEE 730
Score = 32.7 bits (71), Expect = 0.11
Identities = 19/66 (28%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Frame = +2
Query: 473 QKDKEQKM---QQELKREE---EERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALN 634
QK++E+K+ QQE RE+ E+R R E + R++ E+++++ K+ +E++ +R ++ L
Sbjct: 668 QKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRRE--KLDKEEEERRRRELLE 725
Query: 635 AQTYDQ 652
++ ++
Sbjct: 726 KESEEK 731
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +2
Query: 482 KEQKMQQELKREEEERSRIELQNRVMLEKQKQ 577
+E+K +++L +EEEER R EL + EK+++
Sbjct: 703 EERKRREKLDKEEEERRRRELLEKESEEKERR 734
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 33.9 bits (74), Expect = 0.048
Identities = 31/124 (25%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Frame = +2
Query: 482 KEQKMQQELKR------EEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQT 643
+EQK+Q+E +R EE+++ ++E++ LE + +++N TE+ + Q K+AL +
Sbjct: 136 EEQKIQEEFERQITDLLEEQQQLKLEIER---LEAETERANSETEQYEKQ--KEALE-EE 189
Query: 644 YDQFLQYAQQQFPGNFDQQAILIRQLQD--QHYQQYIKQLAVDQRLANSTILNESGDTES 817
Y++ + P D + IR LQD + ++ + + D ++A+ + + ++ S
Sbjct: 190 YEELRNECLKHDP-QLDAE---IRTLQDTFEEVERTLTKQVSDAKIADKPLKDSMFNSNS 245
Query: 818 ENVK 829
E K
Sbjct: 246 EKEK 249
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.5 bits (73), Expect = 0.063
Identities = 17/79 (21%), Positives = 43/79 (54%)
Frame = +2
Query: 467 AIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTY 646
AIQ+ ++K + E KR+ EE++R+E + E + +Q+ + EE+ + ++ +
Sbjct: 532 AIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAE-EQAKREAEEKAKREAEEKAKREAE 590
Query: 647 DQFLQYAQQQFPGNFDQQA 703
++ + A++ +++A
Sbjct: 591 EKAKREAEENAKREAEEKA 609
Score = 27.9 bits (59), Expect = 3.1
Identities = 30/171 (17%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Frame = +2
Query: 464 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQT 643
EA +K K + ++ KRE EE+++ E + + E + +++ + EE+ + ++ +
Sbjct: 588 EAEEKAKREA-EENAKREAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEEKAKREA 645
Query: 644 YDQFLQYAQQQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILNESGDTESEN 823
++ + A+++ ++ A + + + + + ++++ T E+ ++E
Sbjct: 646 EEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRET--EENAKRKAEE 703
Query: 824 VKKEEMVKDCNLNETDVVAV----VDNKSMQTLXKTDPNDYTEVYKEDESE 964
K E K+ + + +A VD + + D T+V K SE
Sbjct: 704 EGKREADKNPEIKSSAPLASSEANVDTSKQTNATEPEVVDKTKVEKLKASE 754
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 30.3 bits (65), Expect = 0.59
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +2
Query: 413 GFVHALDRLCPLF--KPYLEAIQKDKEQKMQQELKREEEERSRIELQNRV-MLEKQKQQS 583
G ++ L LC + +P L+AI+ +E K Q L+REE + + LQ R+ +L K
Sbjct: 106 GELNLLKELCKMINEEPELKAIEDTEESKKQ--LQREESKEADRLLQERIDVLCKNLLDK 163
Query: 584 NKI-TEEQQVQRIKDA 628
I TE R+ DA
Sbjct: 164 LSIWTETDMSDRVTDA 179
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 30.3 bits (65), Expect = 0.59
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 380 LGQMSQIQAMA-GFVHALDRLCPLFKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRV 556
+G+ S+IQ A ++ L+ L K Y + +K QK +L + E R
Sbjct: 3 VGKKSEIQVSAKSNLNFLNELIEEKKRYEDEKRKISHQKYTDKLLEANDN----ETTKRK 58
Query: 557 MLEKQKQQSNKITEEQQVQRIKD 625
+L KQK++SNK + +++ KD
Sbjct: 59 LLVKQKRKSNKEFQSNIIKKRKD 81
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.77
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 458 YLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEK---QKQQSNKITEEQQV 610
Y + + KE+K+Q++ R +EER R + R+ EK Q++Q K+ E++++
Sbjct: 68 YNGSAEAGKEKKLQKQ--RAQEERIRQKEAERLKREKERQQREQEKKLREQEKI 119
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/54 (24%), Positives = 34/54 (62%)
Frame = +2
Query: 464 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKD 625
E ++++KE + Q+E +++ E+ +I + LEK +++ ++ E+Q+ + +D
Sbjct: 96 ERLKREKE-RQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERD 148
>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 791 LNESGDTESENVKKEEMVKDCNLNETDVVAVVD--NKSMQTLXKTDPNDYTEVYKEDESE 964
L+ SG+++ + +E D + E + + +D N T + D+T+V +E ++E
Sbjct: 36 LSSSGESDDSDDSMQEDYDDIHDEEPEDYSAIDPTNIMCSTRTRRKKIDFTKVLEEGQNE 95
Query: 965 DD 970
DD
Sbjct: 96 DD 97
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 461 LEAIQKDKEQKMQQ-ELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQ 613
L A +K +++ M + ELKREEEE ++ + L + QSNK+ Q +
Sbjct: 146 LRAPKKPEKEAMNELELKREEEE---LQYALALSLSESTAQSNKVENPQSTK 194
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 464 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQ 607
E ++K + + +Q LK +EEER + EL + EK++++ ++ EEQ+
Sbjct: 116 ELLEKKRIEAERQRLK-DEEERRKKELMEK---EKKEKERIRLIEEQK 159
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 623 DALNAQTYDQFLQYAQ--QQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILN 796
D +Q + L Q + P N + + L+ Q + + + ++K LA+D ANS
Sbjct: 2 DVWESQHFSALLYLLQCIESNPSNPNVSSRLLIQCLESYSKDFLKFLALDPANANSRKKL 61
Query: 797 ESGDTE 814
ESG+ E
Sbjct: 62 ESGEVE 67
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 2.4
Identities = 23/120 (19%), Positives = 50/120 (41%)
Frame = +2
Query: 476 KDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQF 655
KD+ ++Q + E ER R+ + + K+ NK+T Q+ +D+
Sbjct: 452 KDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQE--------QNNEFDRQ 503
Query: 656 LQYAQQQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILNESGDTESENVKKE 835
L+ ++ ++ L + L++Q +L V+Q L ++G+ N+ +
Sbjct: 504 LKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSD 563
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 488 QKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQFLQYA 667
QKM +E + EEE RI + + E++K+ + ++ R+K + + ++ A
Sbjct: 251 QKMLEEKRAREEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMK-A 309
Query: 668 QQQF--PGNFDQQAILIRQLQ 724
Q ++ +QQA+ R+LQ
Sbjct: 310 QGKYLSKKQKEQQALAQRRLQ 330
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/39 (23%), Positives = 28/39 (71%)
Frame = +2
Query: 461 LEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQ 577
L+ +Q+ ++Q+ QQ+ +++++++ + + Q + ++QKQ
Sbjct: 253 LQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQ 291
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +2
Query: 470 IQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYD 649
+++++E+K E + E ++ L+N + EK+ S+ T E ++ + + + Q
Sbjct: 131 VREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFDDQDL- 189
Query: 650 QFLQYAQQQFPGNFDQQ 700
Q LQ + Q+ + QQ
Sbjct: 190 QMLQDIEDQWLSSQKQQ 206
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 449 FKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQV--QRIK 622
F ++E Q+ +EQ+ + E K+ +++ + N + + ++ N EE+++ R K
Sbjct: 322 FSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREK 381
Query: 623 DALNAQ 640
+ LN Q
Sbjct: 382 NLLNQQ 387
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 485 EQKMQQELKREEEERSRI--ELQNRVMLEKQKQQSNKITEEQQVQR 616
EQK+ + ++ EEE +R E NR + E+++ Q I E + R
Sbjct: 783 EQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAR 828
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 515 EEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQFLQYAQQQFPGNFD 694
EE+ + + E + E++KQ+ ++ E + Q IKD + + QF Y + N D
Sbjct: 698 EEDAKQQAEHDREIFYEREKQRK-EVQERKHEQAIKD---KKAFAQFASYI-HAYKQNID 752
Query: 695 QQ 700
+
Sbjct: 753 DE 754
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 449 FKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQV--QRIK 622
F ++E Q+ +EQ+ + E K+ +++ + N + + ++ N EE+++ R K
Sbjct: 322 FSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREK 381
Query: 623 DALNAQ 640
+ LN Q
Sbjct: 382 NLLNQQ 387
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 473 QKDKEQKMQQELKRE--EEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTY 646
+ ++EQK +++KR EE+ ++ Q LEKQ++ +I E + ++ K AL+
Sbjct: 90 ESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVALDELEL 149
Query: 647 DQ 652
D+
Sbjct: 150 DR 151
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.5 bits (58), Expect = 4.1
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = +2
Query: 476 KDKEQKMQQELK---REEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTY 646
K KE+K E + + + + S + + +M +K K+ S+K + ++ N +
Sbjct: 259 KSKEEKSHGENESGGKLKNKMSTLFRRKTIMPKKDKKPSHK--SNGRPNKLTAFFNKNSK 316
Query: 647 DQFLQYAQQQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILNESGDTESEN 823
+ A++ P N D +I R H Q + + ++ NE+ D +N
Sbjct: 317 ASSISSAEEH-PSNIDDSSIERRHYDSNHSSQIRDHPSTNNNASSYQNFNETSDEGEDN 374
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.5 bits (58), Expect = 4.1
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Frame = +2
Query: 470 IQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYD 649
I+KD E ++++ ++ EEERSR R LEK+KQ +N Q ++ + Y
Sbjct: 239 IEKDPEL-LKRQAEKYEEERSRA----RRRLEKRKQLNN----YQNGTGEEEEDYSSFYG 289
Query: 650 QFLQYAQQQFPGNFDQQAIL--IRQLQDQHYQQYIKQLAVDQRLANSTILNESGDTESEN 823
Y++Q + D+ L I+Q Y+ Y K L ++ + E + E +
Sbjct: 290 PRSTYSEQNEIIDSDRMDRLKRIKQEGAGQYRGYNKDLEENEEDDLGDFIAEEEEEEEQE 349
Query: 824 VKKEEMVKD 850
++EE +D
Sbjct: 350 EEQEEDEED 358
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +2
Query: 476 KDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQF 655
+D+ K EE ++ R E +NR L+K+K+ ++ ++ Q
Sbjct: 282 QDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSREAALKIHASRNTTETQVQSAR 341
Query: 656 LQYAQQQ 676
+Y Q++
Sbjct: 342 ERYLQRK 348
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 443 PLFKPYLEAIQKD--KEQKMQQELKREEEERSRIE 541
PL K L+ ++K+ KEQK ++ RE EE+ + E
Sbjct: 31 PLSKKALKKLEKEREKEQKRKEREAREAEEKKKRE 65
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +2
Query: 482 KEQKMQQELKREEEERSRIELQ--NRVMLE----KQKQQSNKITEEQQVQRIKDALNAQT 643
+E + ++EL R EER R+E Q M E +Q + K EE QR KD+ +
Sbjct: 277 RELEKKKELLRIAEERQRLEKQATEYQMPEDYFTEQGKLDRKRKEEVLYQRYKDSNEGEQ 336
Query: 644 YDQFLQYAQQQ 676
+ + A+QQ
Sbjct: 337 NEVTMGAAEQQ 347
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 715 ATTRSTLSTIYKAAGCRSEISKFYHTQRKR*HRE 816
A R TL+ K G ++ KF HT RKR RE
Sbjct: 979 AVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMRE 1012
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 377 LAKLHAXXSLXHPRHPEVVQNWDQMDR 297
L K A SL +P ++NWD M+R
Sbjct: 81 LKKASAGYSLDYPIRHGQIENWDHMER 107
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 483 RNKRCNKS*NEKKKKDLESNF 545
+N++CN++ NE+KK +SNF
Sbjct: 33 QNRKCNQASNEEKKILYKSNF 53
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 455 PYLEAIQKDKEQ-KMQQELKREEEERSRIELQNRV-MLEKQKQQSNKITEEQQVQRIKDA 628
PY EA ++K Q +++ +R+ E R++ Q + EK ++ ++ ++Q+
Sbjct: 263 PYTEAAAQEKSQEELELIAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLV 322
Query: 629 LNAQTYDQFLQYA 667
L+ + + + L+ A
Sbjct: 323 LSRRAFQRALEEA 335
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 9.5
Identities = 32/172 (18%), Positives = 70/172 (40%), Gaps = 2/172 (1%)
Frame = +2
Query: 461 LEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQ 640
L A++KD + + K + + S + +N L +N + E +V + + +
Sbjct: 256 LLALEKDGQVEKSDCSKNTQLKPSFLP-KNTDDLLNGTDDNNIVLREVKVSFENEKIESD 314
Query: 641 TYD--QFLQYAQQQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILNESGDTE 814
D + + ++ P ++ I +R+ D Q + ++ N + D++
Sbjct: 315 DLDKNEEISEGEEYTPIEESKEPITVRR--DSVIQIDESSAGLTDVISELNFTNHNDDSK 372
Query: 815 SENVKKEEMVKDCNLNETDVVAVVDNKSMQTLXKTDPNDYTEVYKEDESEDD 970
+ N+ D +NE + +A S + K +P DY + DE+ +D
Sbjct: 373 NSNITTSN---DSPVNEVEPMA--PELSSAVVEKKEPEDYESISAVDENTND 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,846
Number of Sequences: 5004
Number of extensions: 60828
Number of successful extensions: 322
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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