Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L02
         (1174 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   2.5  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -2

Query: 585 GC-GIEIQTLESGIGYACGTSNDCVADDVNSHERSVLCR 472
           GC G   +T+   + YAC    +C+ D      R   CR
Sbjct: 105 GCKGFFKRTVRKDLSYACREEKNCIIDK-RQRNRCQYCR 142


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 584 PLSLTLSFPFEGTFYV 631
           PL+L L FP++G F V
Sbjct: 208 PLNLGLDFPYQGKFEV 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,686
Number of Sequences: 336
Number of extensions: 2368
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34228204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)