Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L02
         (1174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    42   1e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    34   0.033
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.23 
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.23 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.31 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    31   0.41 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   2.9  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   3.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   5.0  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   6.6  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   6.6  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    26   8.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.8  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +3

Query: 126 PSKXHRPRLSRSGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWV-----ASNPPGFAF 290
           P+K  +P    +  C V VG L  +     L   F  YG +    V     +    G+ +
Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308

Query: 291 VEFEAPRXAEAAVRGLDGRTXCGRSARVEMSN 386
           V+FE P  A+AAV     +   GR   +++SN
Sbjct: 309 VDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 279 GFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEMS 383
           GF F EF+ P  AE A+ GLDG+   G     + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +3

Query: 165 ACKVSVGALGHHARXPXLXAAFSXYGPLRXVWV-----ASNPPGFAFVEFEAPRXAEAAV 329
           +C V VG + +      +   F   GP++   +     +  P G+ F E+  P  A +AV
Sbjct: 4   SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63

Query: 330 RGLDGRTXCGRSARVE 377
           R L+      R  RV+
Sbjct: 64  RNLNNYDAGTRRLRVD 79


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 174 VSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPG----FAFVEFEAPRXAEAAVRGLD 341
           V VG L        L  AF  +G +  V +          +AFVEF+ P  A+ A+  ++
Sbjct: 8   VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67

Query: 342 GRTXCGRSARVEMSN 386
               C R  RV  +N
Sbjct: 68  YSILCDRCIRVSPAN 82


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 459 CYDCGDRGHYARDC 500
           CY+CG+ GH AR+C
Sbjct: 19  CYNCGENGHQAREC 32



 Score = 29.9 bits (64), Expect = 0.71
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 459 CYDCGDRGHYARDC 500
           CY CG  GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 459 CYDCGDRGHYARDC 500
           CY CG  GH ARDC
Sbjct: 85  CYKCGRVGHIARDC 98



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 459 CYDCGDRGHYARDC 500
           CY CG  GH  RDC
Sbjct: 60  CYACGTAGHLVRDC 73


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 237 YGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEM 380
           YG +  + V  N  G  FV+FE    AE A+ GL  R   GR+ +  +
Sbjct: 541 YGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 222 AAFSXYGPLRXVWVA----SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEMSN 386
           A F  +G +  V +     +   GF ++++  P  A  A+  ++G    GR+ RV + N
Sbjct: 358 AIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGN 416


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 216 LXAAFSXYGPLRXVWV-----ASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARV 374
           L + F  +G L  V +      +NP GFA+++F     A  A   LD +   GR   V
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 279 GFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEMSN 386
           GF FVEF+    A AA+  ++G    G    +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 326 CGFSXPWSFEFNKCEAWRIA 267
           CG   PW+F F  C AW+IA
Sbjct: 164 CGQIIPWNFPFLMC-AWKIA 182


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 216 LXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGR 347
           + A FS YG ++ +W+ S P   A V +E+   A  A   L  R
Sbjct: 16  IHALFSAYGNVKDIWMLS-PDNSAIVSYESLSSAIVARDALHNR 58


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 FSXYGPLRXVWVA--SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVE 377
           FS YG +    +   S  P FAF+ F++ + A AAV G        +  RVE
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
 Frame = +3

Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASN---------PPGFAFVEFEAPRXAEA 323
           +V VG L    +   + + F   G +R V +            P G AFV F      + 
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104

Query: 324 AVRGLDGRTXCGRSARVE 377
           A+  L+G+T   R   V+
Sbjct: 105 AIETLNGKTLDDREIVVQ 122


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 345 VHPNHVLRLQXPVELRIQQMRSLEDCL 265
           V PN +L+L+  V  R+ Q + + DCL
Sbjct: 147 VSPNDLLKLKQRVAQRLLQQKKIFDCL 173


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 459 CYDCGDRGHYARDC 500
           C  CG  GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,385
Number of Sequences: 5004
Number of extensions: 36698
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)