Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L02
(1174 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 75 1e-13
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 75 1e-13
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 75 1e-13
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 57 3e-08
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 50 3e-06
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 50 3e-06
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 46 4e-05
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 46 4e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 42 0.001
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 42 0.001
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 42 0.001
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 41 0.001
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 41 0.001
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 41 0.001
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 0.004
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.018
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.055
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 36 0.073
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 35 0.13
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.29
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.29
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.90
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 1.2
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 1.6
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 3.6
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 30 3.6
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 29 6.3
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 29 6.3
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 6.3
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 6.3
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 6.3
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 8.4
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 29 8.4
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 8.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 8.4
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 29 8.4
AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormo... 29 8.4
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 74.9 bits (176), Expect = 1e-13
Identities = 38/71 (53%), Positives = 43/71 (60%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
KV VG L A L F +G +R VWVA PPGFAFVE++ R AE AVR LDG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 351 XCGRSARVEMS 383
CG ARVE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 74.9 bits (176), Expect = 1e-13
Identities = 38/71 (53%), Positives = 43/71 (60%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
KV VG L A L F +G +R VWVA PPGFAFVE++ R AE AVR LDG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 351 XCGRSARVEMS 383
CG ARVE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 74.9 bits (176), Expect = 1e-13
Identities = 38/71 (53%), Positives = 43/71 (60%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
KV VG L A L F +G +R VWVA PPGFAFVE++ R AE AVR LDG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 351 XCGRSARVEMS 383
CG ARVE+S
Sbjct: 64 ICGVRARVELS 74
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 56.8 bits (131), Expect = 3e-08
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 216 LXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEM 380
+ A FS GP++ +W+A PPGFAFV F+ A AV+ L+G+ C A+VEM
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 50.0 bits (114), Expect = 3e-06
Identities = 32/72 (44%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNP-PGFAFVEFEAPRXAEAAVRGLDGR 347
KV VG L R + F YG ++ V + S P FAFVEFE R AE AVR DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 348 TXCGRSARVEMS 383
GR RVE +
Sbjct: 70 EFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 50.0 bits (114), Expect = 3e-06
Identities = 32/72 (44%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNP-PGFAFVEFEAPRXAEAAVRGLDGR 347
KV VG L R + F YG ++ V + S P FAFVEFE R AE AVR DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 348 TXCGRSARVEMS 383
GR RVE +
Sbjct: 70 EFDGRRIRVEFT 81
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 46.4 bits (105), Expect = 4e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +3
Query: 144 PRLSRSGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEA 323
P+ +G C++ VG L + + L FS +G + +++ GFAF+ + AE+
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAES 165
Query: 324 AVRGLDGRTXCGRSARVEMS 383
A +DGR GR RV +
Sbjct: 166 AKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 46.4 bits (105), Expect = 4e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +3
Query: 144 PRLSRSGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEA 323
P+ +G C++ VG L + + L FS +G + +++ GFAF+ + AE+
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAES 165
Query: 324 AVRGLDGRTXCGRSARVEMS 383
A +DGR GR RV +
Sbjct: 166 AKEAIDGRIIHGRQVRVRFA 185
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPG-----FAFVEFEAPRXAEAAVRG 335
++ VG++ R L AF +GP++ + ++ +P FAFVE+E P A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 336 LDGRTXCGRSARV 374
++G+ GR+ +V
Sbjct: 163 MNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPG-----FAFVEFEAPRXAEAAVRG 335
++ VG++ R L AF +GP++ + ++ +P FAFVE+E P A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 336 LDGRTXCGRSARV 374
++G+ GR+ +V
Sbjct: 163 MNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPG-----FAFVEFEAPRXAEAAVRG 335
++ VG++ R L AF +GP++ + ++ +P FAFVE+E P A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 336 LDGRTXCGRSARV 374
++G+ GR+ +V
Sbjct: 163 MNGQMLGGRNLKV 175
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
++ +G + ++AR + YG + + S GFAFV+FE R AE A LDG+T
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI---SMKYGFAFVDFEDSRDAEDACHDLDGKT 59
Query: 351 XCGRSAR--VEMS 383
G S R VEM+
Sbjct: 60 MEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
++ +G + ++AR + YG + + S GFAFV+FE R AE A LDG+T
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI---SMKYGFAFVDFEDSRDAEDACHDLDGKT 59
Query: 351 XCGRSAR--VEMS 383
G S R VEM+
Sbjct: 60 MEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
++ +G + ++AR + YG + + S GFAFV+FE R AE A LDG+T
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI---SMKYGFAFVDFEDSRDAEDACHDLDGKT 59
Query: 351 XCGRSAR--VEMS 383
G S R VEM+
Sbjct: 60 MEGSSMRLVVEMA 72
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDGRT 350
+V +G L + A + F YG L V + N GF FV+F+ R A+ AV L+G+
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNGKE 59
Query: 351 XCGRSARVE 377
CG +E
Sbjct: 60 LCGERVILE 68
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 38.3 bits (85), Expect = 0.010
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +3
Query: 165 ACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDG 344
A ++ +G L + F YG +R V + + GF FVEF+ R AE AV L+G
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNG 58
Query: 345 RTXCGRSARVEMS 383
+ G ++ S
Sbjct: 59 KELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 38.3 bits (85), Expect = 0.010
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +3
Query: 165 ACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDG 344
A ++ +G L + F YG +R V + + GF FVEF+ R AE AV L+G
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNG 58
Query: 345 RTXCGRSARVEMS 383
+ G ++ S
Sbjct: 59 KELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 38.3 bits (85), Expect = 0.010
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +3
Query: 165 ACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLDG 344
A ++ +G L + F YG +R V + + GF FVEF+ R AE AV L+G
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNG 58
Query: 345 RTXCGRSARVEMS 383
+ G ++ S
Sbjct: 59 KELGGERVILDYS 71
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 37.5 bits (83), Expect = 0.018
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +3
Query: 159 SGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASN-----PPGFAFVEFEAPRXAEA 323
SG V VG L FS G + V + + P GFAF+EF A+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 324 AVRGLDGRTXCGRSARVEMSN 386
AV ++G GR RV ++N
Sbjct: 62 AVEQMNGAEFNGRPLRVNLAN 82
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.9 bits (79), Expect = 0.055
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 273 PPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEMSN 386
P GFAFVEF A+ AV L+G GR+ RV +N
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYAN 83
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 35.5 bits (78), Expect = 0.073
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 459 CYDCGDRGHYARDC 500
CY+CG RGHY+RDC
Sbjct: 69 CYNCGGRGHYSRDC 82
Score = 29.5 bits (63), Expect = 4.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 459 CYDCGDRGHYARDC 500
CY+C + GH++RDC
Sbjct: 37 CYNCQETGHFSRDC 50
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 34.7 bits (76), Expect = 0.13
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 174 VSVGALGHHARXPXLXAAFSXYGPLRXVWVASN-----PPGFAFVEFEAPRXAEAAVRGL 338
V VG + + + + FS G + + + + P G+ F+EF + AE A+R L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 339 DGRTXCGRSARVE 377
+G GR RV+
Sbjct: 80 NGYELSGRILRVD 92
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.5 bits (73), Expect = 0.29
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +3
Query: 159 SGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWV-----ASNPPGFAFVEFEAPRXAEA 323
+G + + L + L F YG + V + + GF FV F R AE
Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75
Query: 324 AVRGLDGRTXCGRSARVEMS 383
A+ DG+ GR RV ++
Sbjct: 76 ALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.5 bits (73), Expect = 0.29
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +3
Query: 159 SGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWV-----ASNPPGFAFVEFEAPRXAEA 323
+G + + L + L F YG + V + + GF FV F R AE
Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75
Query: 324 AVRGLDGRTXCGRSARVEMS 383
A+ DG+ GR RV ++
Sbjct: 76 ALDRTDGKLVDGRELRVTLA 95
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.90
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +3
Query: 153 SRSGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNP------PGFAFVEFEAPRX 314
S S A +V + L + L FS YG ++ V + + G+ +VE++
Sbjct: 128 SASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLED 187
Query: 315 AEAAVRGLDGRTXCGRSARVEMS 383
AE +++ +DG G + VEM+
Sbjct: 188 AEKSIKHMDGGQIDGMAVHVEMT 210
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 273 PPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVEMS 383
P GFAFVEF A+ AV +G GR+ RV ++
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 267 SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVE 377
+N G+ FV+FE+P+ A AAV GL+ + A+++
Sbjct: 145 NNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQ 181
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 267 SNPPGFAFVEFEAPRXAEAAVRGLDGRTXCGRSARVE 377
+N G+ FV+FE+P+ A AAV GL+ + A+++
Sbjct: 119 NNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQ 155
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = +3
Query: 144 PRLSRSGACKVSVGALGHHARXPXLXAAFSXYGPLRXVWV----ASNPPGFAFVEFEAPR 311
PR S + VG + + L F YG ++ + + A P G+AF+E+
Sbjct: 96 PRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKA 155
Query: 312 XAEAAVRGLDGRTXCGRSARVE 377
A + DG G+ V+
Sbjct: 156 EMHTAYKKADGIKVDGKRLVVD 177
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 30.7 bits (66), Expect = 2.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 459 CYDCGDRGHYARDC 500
CY CG++GHYA C
Sbjct: 252 CYKCGEKGHYANRC 265
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.9 bits (64), Expect = 3.6
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +3
Query: 189 LGHHARXPXLXAAFSXYGPLRXVWVASNPP-----GFAFVEFEAPRXAEAAVRGLDGRTX 353
L + + L F YG + V V + GFA VEF P A AA LDG
Sbjct: 286 LPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVF 345
Query: 354 CGRSARV 374
GR +
Sbjct: 346 KGRMMHI 352
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 29.9 bits (64), Expect = 3.6
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +3
Query: 165 ACKVSVGALGHHARXPXLXAAFSXYGPLRXVWVA-----SNPPGFAFVEFEAPRXAEAAV 329
+C + VG L ++ + + F G +R V + P GF FVE+ AE A+
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 330 RGLDGRTXCGRSARVE 377
+ + R R +
Sbjct: 96 QNISNTRMDDRVIRAD 111
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 498 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 373
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 498 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 373
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 29.1 bits (62), Expect = 6.3
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNP-----PGFAFVEFEAPRXAEAAVRG 335
K+ +G L H L FS +GP+ V +P GF FV F + AE+A+
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 109
Query: 336 ----LDGRTXCGRSA--RVEMSN 386
L G+T + A R +MS+
Sbjct: 110 RPHKLGGKTVDSKRAIPREQMSS 132
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 29.1 bits (62), Expect = 6.3
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNP-----PGFAFVEFEAPRXAEAAVRG 335
K+ +G L H L FS +GP+ V +P GF FV F + AE+A+
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 129
Query: 336 ----LDGRTXCGRSA--RVEMSN 386
L G+T + A R +MS+
Sbjct: 130 RPHKLGGKTVDSKRAIPREQMSS 152
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 29.1 bits (62), Expect = 6.3
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASNP-----PGFAFVEFEAPRXAEAAVRG 335
K+ +G L H L FS +GP+ V +P GF FV F + AE+A+
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 336 ----LDGRTXCGRSA--RVEMSN 386
L G+T + A R +MS+
Sbjct: 131 RPHKLGGKTVDSKRAIPREQMSS 153
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 28.7 bits (61), Expect = 8.4
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +3
Query: 171 KVSVGALGHHARXPXLXAAFSXYGPLRXVWVASN----PPGFAFVEFEAPRXAEAAVRGL 338
KV V + A L A FS +G + V ++ P G AFV+F+ A+ V
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASG 743
Query: 339 DGRTXCGRSARVEMSN 386
D R V +SN
Sbjct: 744 DKLMLRERELEVALSN 759
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 228 FSXYGPLRXVWVASNPPGFAFVEFEAPRXAEAAVRGLD 341
FS + LR V N FAF+E+E+ +E A + LD
Sbjct: 163 FSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 8.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 459 CYDCGDRGHYARDC 500
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 8.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 459 CYDCGDRGHYARDC 500
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 543 YACGTSNDCVADDVNSHERSVLCRRSRNNDHHTAEEADANE 421
YAC +N+C S+ER +LCR R + A + NE
Sbjct: 76 YACSRNNNCAT----SYERKILCRACRYTNCLEAGMSRGNE 112
>AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 72 protein.
Length = 324
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 543 YACGTSNDCVADDVNSHERSVLCRRSRNNDHHTAEEADANE 421
YAC +N+C S+ER +LCR R + A + NE
Sbjct: 41 YACSRNNNCAT----SYERKILCRACRYTNCLKAGMSRGNE 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,113
Number of Sequences: 27780
Number of extensions: 218224
Number of successful extensions: 630
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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