Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K24
         (1143 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-1|AAG00051.1|  507|Caenorhabditis elegans Fizzy (cdc20 pr...    54   2e-07
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    45   1e-04
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   3.5  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   3.5  

>U21321-1|AAG00051.1|  507|Caenorhabditis elegans Fizzy (cdc20
           protein family) homologprotein 1 protein.
          Length = 507

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +1

Query: 664 ALNDTEPG-RLLQYTCK-APAAPEGYQNRLRVVYSQTKV---PSSVKCNTRYIPQAPDRI 828
           AL D + G R+L Y    AP    GY N+ +V+YS   V    SSVK +TR++ +   ++
Sbjct: 109 ALTDADDGDRILCYKKNLAPPPAIGYINQAKVLYSTNSVINPASSVKKSTRHVKETATKV 168

Query: 829 LDAPEIXXDYXXNLVDXSASXXLAXXXGNSXYLWN 933
           LD P +  D     +D      +A   G+  YLWN
Sbjct: 169 LDGPGLTKDLYSRHLDWGCHNWVAVALGHELYLWN 203


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +1

Query: 799 RYIPQAPDRILDAPEIXXDYXXNLVDXSASXXLAXXXGNSXYLWNA 936
           R +P+ P ++LDAPE+  D+  NLVD S+   L+       YLW+A
Sbjct: 376 RKVPKNPYKVLDAPELQDDFYLNLVDWSSQNQLSVGLAACVYLWSA 421


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 CNQSLQKLSISANQSCNNSALSNNKTPTRNEN 450
           CN  L  +S S N S  NS+LSN++ P  NEN
Sbjct: 486 CNVGLHHIS-SGNLSSFNSSLSNDQFPFANEN 516


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 CNQSLQKLSISANQSCNNSALSNNKTPTRNEN 450
           CN  L  +S S N S  NS+LSN++ P  NEN
Sbjct: 622 CNVGLHHIS-SGNLSSFNSSLSNDQFPFANEN 652


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 310 LSNSFKNHSNINISSCNQ-SLQKLSISANQSCNNSALSNNKTPT 438
           L N      N+++ SC     Q+LSIS+N     S + NNKT T
Sbjct: 228 LKNELDRIINVDLDSCQALCTQRLSISSNDFNCKSFMYNNKTRT 271


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 310 LSNSFKNHSNINISSCNQ-SLQKLSISANQSCNNSALSNNKTPT 438
           L N      N+++ SC     Q+LSIS+N     S + NNKT T
Sbjct: 228 LKNELDRIINVDLDSCQALCTQRLSISSNDFNCKSFMYNNKTRT 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,997
Number of Sequences: 27780
Number of extensions: 360242
Number of successful extensions: 1152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)