Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K21
         (1168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   169   5e-43
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   1.2  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  169 bits (412), Expect = 5e-43
 Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 8/227 (3%)
 Frame = +1

Query: 238 PHVPPSAEKRPWKIV-------WRNVILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYL 396
           P  P   +++PW +        W + +L F L +  +YG  +F      +T IFAI  Y 
Sbjct: 42  PKAPKHIQEQPWTMQNWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYA 99

Query: 397 CSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSETDAD 576
            SGLGITAG HRLW+H++YKA+ PL   L      AF+ ++  W+RDHR HH+Y++TD D
Sbjct: 100 YSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKD 159

Query: 577 PHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLHNDPILRFQKKYYQILMPLACFIM 756
           P+N  +GF+++H+GW+++ ++P    +    DV+DL++DP + F  +++  +     FI 
Sbjct: 160 PYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFLPIASFMAFIF 216

Query: 757 PT-YVPTLWGETVWNSFYVCAIFRYVYVLNITWLVNSXXHMWGXKPY 894
           P+ +   LWG+     FY   + R V+V + T+ VNS  H+ G +P+
Sbjct: 217 PSLFCGLLWGDYRGGYFY-AGVCRLVFVHHATFCVNSLAHLIGSQPF 262


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 240  PCTSLSREETMEDCVEKRDSVLYSACRWC 326
            PC ++S+  T  +   K+ S+L+  CR C
Sbjct: 1407 PCATISKAVTQHNAYNKKLSLLFDICRGC 1435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,081,004
Number of Sequences: 5004
Number of extensions: 93609
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)