Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K19
         (1212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/64 (26%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
 Frame = +2

Query: 836  PPXXXKXXPPPXPPXGRGGXXXXPXXXXXXGGGXPPPXGG--XXKPPPXPXGXXXXKKXX 1009
            PP        P PP GR      P       G  PPP         PP P      +   
Sbjct: 342  PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401

Query: 1010 XXPP 1021
              PP
Sbjct: 402  ALPP 405



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/65 (27%), Positives = 19/65 (29%)
 Frame = +2

Query: 851  KXXPPPXPPXGRGGXXXXPXXXXXXGGGXPPPXGGXXKPPPXPXGXXXXKKXXXXPPXXK 1030
            K  PPP PP  R      P          PP       PPP P            PP  +
Sbjct: 308  KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPP-------PPPPPRSNAAGS--IPLPPQGR 358

Query: 1031 KXXPP 1045
               PP
Sbjct: 359  SAPPP 363



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 802 PPKXPPXAPPXXPP 843
           PP  PP APP  PP
Sbjct: 420 PPSLPPSAPPSLPP 433


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +2

Query: 860 PPPXPPXGRGGXXXXPXXXXXXGGGXPPPXGGXXKPPPXP 979
           P P P    GG    P      G G PPP      PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP------PPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 568 GGGXGXPPP-XGGXXXXPXXGGXPXKKXXXKXXXXGPXPQKGXGGG 702
           GGG G PPP  GG       GG             GP   +G  GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.150    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,074
Number of Sequences: 5004
Number of extensions: 31806
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)