Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K17
         (1245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    38   0.002
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    33   0.062
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    30   0.77 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    30   0.77 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   5.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   5.4  

>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +1

Query: 133 RKLENEECYAVAIYNFTSKSQSHLPLEVGELIHLEGET-EEWYCGQSLRRDLK-----GA 294
           RK + E  +  AIY+FT +++  L L  G++I +  +   +WY G+ +    +     G 
Sbjct: 275 RKSKKETVFVKAIYSFTGRNEKELDLHTGDVIQVSEQLGPDWYMGEKVNSKAEKLGNSGM 334

Query: 295 FPKSYVVK 318
           FP +Y  +
Sbjct: 335 FPVNYCTR 342


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 139 LENEECYAVAIYNFTSKSQSHLPLEVGELIHLEGETEEWYCGQSLRRDLKGAFPKSYV 312
           L+ +  Y  A+Y +T++S   L ++ G++I +          + +   + G FP +YV
Sbjct: 582 LDGDSSYVKALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEGILNGVTGQFPANYV 639


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +1

Query: 172 YNFTSKSQSHLPLEVGELIHLEGETEE-WYCGQSLRRD-----LKGAFPKSYVV 315
           Y+F  ++++ L L+ G+L+ +  E +E W+ G+ L  D       G FP +Y V
Sbjct: 430 YSFEPETENELKLKKGDLLLVLKEIDEGWWVGEKLGEDGVFTGNTGMFPSNYCV 483


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 154 CYAVAIYNFTSKSQSHLPLEVGELIH-LEGETEEWYCGQSLRRDLKGAFPKSYV 312
           C   A+Y +  + +  L    G+LI  L     +W+ G+ +  + +G FP ++V
Sbjct: 9   CMVRALYAWPGEREGDLKFTEGDLIECLSIGDGKWWIGRHINTNTQGIFPSNFV 62


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +1

Query: 595 DMELAVRNSNGQLVDPLKMSTYRLNALHDEANTRIDKNMETTPVTPNVTPAGVRTFTVCV 774
           DM++ V  SNG+LV   +MS        D    ++++  E   +T NVT   +       
Sbjct: 576 DMQIVVALSNGELV-YFEMS-------DDVEGGQLNEYQERKTLTANVTSLALGPVQEGS 627

Query: 775 RVHNFVCRV---AXVAXLSLSLHDAAGN 849
           R  NF+C     A V  LSL L+    N
Sbjct: 628 RRSNFMCLACDDATVRVLSLDLYTTLEN 655


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 393  DIVNDAIAAS*SHYTFAASVNNAIPLDDITFWEGAFEVPPETLTAIPLFRFTFEMNEL 220
            D VNDAI+    + +F        P   +  ++G F  P  +L+  PL  FT  +NE+
Sbjct: 1275 DTVNDAISNLSQNSSFDMKFGLHFPKISLNLYDGTFITPENSLS--PLSNFT--LNEI 1328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,771
Number of Sequences: 5004
Number of extensions: 76771
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)