Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K15
         (1245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    49   2e-06
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    36   0.015
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    30   0.77 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   3.1  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   4.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   4.1  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    27   5.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   5.4  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   5.4  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 34/136 (25%), Positives = 70/136 (51%)
 Frame = +1

Query: 232 GFSKLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQELYSRVIQSGANDIQAHLLFGSK 411
           G   L Q++ +L  E+     LP ++ +LG++ + ++   + V  S   + +AH L    
Sbjct: 14  GIPFLDQKSRKLANELL-EPCLPFIQFNLGEIEQRAKHYLNTVPTSKDGNTKAHYLLAGS 72

Query: 412 GIDLNQISQKLETLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTED 591
           GI+  Q  +K+E+LS +        ++ +D++ FLK  +E  +L+ ++ + +N+ Q   D
Sbjct: 73  GINAEQTWKKIESLSLQVRPPTTLELSFTDVDMFLKYHREKNVLNSLEALVQNT-QIAFD 131

Query: 592 QKWEHMLSEWNKEKIK 639
           Q   ++  EW  +  K
Sbjct: 132 Q---YLEEEWRSKAAK 144


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 16/64 (25%), Positives = 35/64 (54%)
 Frame = +1

Query: 292 ELPRVERSLGQVLEASQELYSRVIQSGANDIQAHLLFGSKGIDLNQISQKLETLSSKRTF 471
           ++P ++  L Q+ E ++ L S+V+ +   D +AH L    G++  Q  QK+ ++     +
Sbjct: 43  QVPVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMNAEQTRQKIYSIHIHSPW 102

Query: 472 EPLQ 483
           + L+
Sbjct: 103 DQLE 106


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +1

Query: 286  NEELPRVERSLGQVLEASQELYSRVIQSGANDIQAHLLFGSKGID--LNQISQKLETLSS 459
            ++E  R+E    ++ E SQ +     +   +D Q  L   +K  +  L  I Q  + + +
Sbjct: 3109 SKEKSRIENGFKKIKETSQGIDK--FKEALSDQQNVLFSKTKTANDRLQCIIQTKQAVEA 3166

Query: 460  KRTFEPLQPIADSDIESFLKNEKENAIL 543
            K+ +  LQ  A    +SFL NEK+N+++
Sbjct: 3167 KKVYS-LQAEASLQKKSFLLNEKKNSVM 3193


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 340 QELYSRVIQSGANDIQAHLLF---GSKGIDLNQISQKLETLSSKRTFEPL 480
           ++ Y+ +++  A+D++  L+    G  G+D   +S++   L S + F+P+
Sbjct: 443 EDSYAEIMRYSAHDLKKRLMIRFDGEDGLDYGGLSREFFFLLSHKMFDPI 492


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 NEELPRVERSLGQVLEASQELYSRVIQSGANDIQ 387
           +EELP+V  ++ Q  ++ +   SR    G+ND++
Sbjct: 850 SEELPQVHETINQYRKSCETQRSRKSHEGSNDLE 883


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = +1

Query: 436  QKLETLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTEDQKWEHMLS 615
            ++ E L+++      +     ++E+ L NEK   I  L ++  KNS + T D   + M+ 
Sbjct: 1588 KETEILAARSELVAEKEKTKEELENQL-NEKSQRIKELEEQAQKNSSENTHD-NIDDMIK 1645

Query: 616  EWNKEKIK 639
            +  +EK+K
Sbjct: 1646 QQVEEKLK 1653



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 27/148 (18%), Positives = 63/148 (42%)
 Frame = +1

Query: 196  HSKREYSKMGDEGFSKLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQELYSRVIQSGA 375
            +SK   + +    + + L + EQLT E+E  + + R +    +   +S +L    IQ   
Sbjct: 652  NSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQL 711

Query: 376  NDIQAHLLFGSKGIDLNQISQKLETLSSKRTFEPLQPIADSDIESFLKNEKENAILSLID 555
              + +      + ++  + S  L   S     E  + + +      ++ +  ++ LS+ +
Sbjct: 712  TSLTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIEVQNVSSQLSICN 771

Query: 556  EVNKNSLQTTEDQKWEHMLSEWNKEKIK 639
               + S    ++ K E++L    K+K+K
Sbjct: 772  SQLEQSNHIVDNLKSENLLLTSVKDKLK 799


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 241 KLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQELYS 354
           K L  +EQ+TT+I G+ E+  +  + G++L  S+ L S
Sbjct: 73  KPLYASEQITTDISGSGEILVLGTNSGEILIYSEHLGS 110


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 303 SRQFFITFYLSR*LFCLLK*FTKSFISHFRVF 208
           +R F+ T+Y SR  F L+  F + ++ HF +F
Sbjct: 496 NRAFYKTYYESRSWFHLITNFNRIWVIHFGMF 527


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = +1

Query: 418  DLNQISQKLETLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTEDQK 597
            D+N+ S+  +    K      +  + +   + L++E E     + +   K+  +  E  +
Sbjct: 881  DINKSSEDCDLQKKKLLEVSSKQGSQAPFLNELESEYEKLEADIQEMAQKSRTEILEANE 940

Query: 598  WEHMLSEWNKE 630
            + H L+EWN E
Sbjct: 941  YLHQLNEWNSE 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,878
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)