Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_K15
(1245 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 40 0.004
03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732... 38 0.012
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 33 0.35
10_02_0152 - 5902554-5903058,5904171-5904670 31 2.5
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 30 3.3
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626... 30 4.4
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 29 7.6
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 39.9 bits (89), Expect = 0.004
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 307 ERSLGQVLEASQELYSRVIQSGANDIQAHLLFGSKGIDLNQISQKLETLS-SKRTFEPLQ 483
+R L + +E R IQ ++ + I + +++Q E + SK+ E ++
Sbjct: 157 DRELEETIERLISECERKIQRALKRLEEDDAKAAIAISITEVTQSKEVIEFSKQIKEKMK 216
Query: 484 PIADSDIESFLKNEKENAILSLIDEVNKNSLQTTEDQKWEHMLSEWNKEKIKLMNAMIGP 663
I D+E + + + +EV+K Q E+Q +H+L +NK+++ LM ++
Sbjct: 217 EIDAFDLEGNTEGK-----IRATEEVDKLKEQRAEEQA-KHLLEAFNKDRVSLMTSLQTA 270
Query: 664 SQNWLDLKRTPEPPSIADAPKKFGHSMLD 750
+Q+ P PP +A AP M+D
Sbjct: 271 NQS------IP-PPPVAAAPDARTQEMID 292
>03_02_0995 -
13071930-13072007,13072708-13072999,13073096-13073226,
13073564-13074466,13074545-13074631,13075141-13075224,
13075355-13075408,13075903-13076034,13076164-13076259,
13076508-13076777,13078711-13078800,13079942-13080008,
13080150-13080241,13080359-13080487
Length = 834
Score = 38.3 bits (85), Expect = 0.012
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = +1
Query: 232 GFSKLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQELYSRVIQSGA--NDIQAHLLFG 405
G+S+LL + +L + P ++R+L Q+ S +L ++ +++ A + A L
Sbjct: 18 GWSELLHSSTKLLEQAAPTPHFPPLQRNLDQLEVLSTKLKAKTVRAEAPVQSLSATRLLA 77
Query: 406 SKGIDLNQISQKLETLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTT 585
+GI+ Q+++ D++SF E AI+S I E K++L++
Sbjct: 78 REGINAEQLAR--------------------DLKSFELKLHEMAIVSSIQEAQKDNLRSF 117
Query: 586 EDQKWEHMLSEWNKEKIKLMNAM 654
+ + + +W KEK + ++
Sbjct: 118 NNYMMQVLEDDWQKEKRDFLQSL 140
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 33.5 bits (73), Expect = 0.35
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +1
Query: 373 ANDIQAHLLFGSKGIDLNQIS-QKLETLSSKRTFEPLQPIADS--DIESFLKNEKENAIL 543
++ IQ L G + D+NQI Q LSS++ +PL P+A + + F +N +
Sbjct: 2269 SSTIQTVQLEGIRSEDMNQIGVQSNSALSSEQPTQPL-PVAPLVFNYQRFSDEPLKNELE 2327
Query: 544 SLIDEVNKNSLQTTEDQKWEHMLSEWNKEKIKL 642
L + N L +QK + +L E+N+E KL
Sbjct: 2328 RL--KHTSNVLSKVHEQKRKQLLVEYNQEMEKL 2358
>10_02_0152 - 5902554-5903058,5904171-5904670
Length = 334
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 598 WEHMLSEWNKEKIKLMNAMIGPSQNWLDLKRTP 696
W+H+L WN K+K N +I + D+KR P
Sbjct: 208 WDHILGYWNASKVKPDNVLI---LKYEDMKRNP 237
>01_06_1480 -
37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 238 SKLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQELYSRVIQSGANDIQ 387
SK+L + +++ ++ N +P + +SLG +LE S +Y + N +Q
Sbjct: 793 SKILDKMKKVVAALDDNYNVPTLLQSLGLILEHSPSMYKLYDKKIMNFVQ 842
>05_05_0125 -
22561972-22562028,22562318-22562416,22562496-22562624,
22563312-22563355,22563570-22563642,22563791-22563877,
22563985-22564069,22565460-22565533,22565612-22566192,
22566275-22568270
Length = 1074
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 205 REYSKMGDEGFSKLLQQAEQLTTEIEGNEELPRVERSLGQVLEASQE 345
R+ SK DEG+ L + E + N+E RV ++ +V + S E
Sbjct: 455 RDVSKNNDEGYQPLATENEACDVPLLENDEACRVPANVDKVCDVSNE 501
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 29.1 bits (62), Expect = 7.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 448 TLSSKRTFEPLQPIADSDIESFLKNEKENAILSLIDEVNKNSLQTTE 588
T S+R PL + D+ SFL + + + +++L+D + TE
Sbjct: 21 TFRSRRADVPLPADPEVDVVSFLASRRHSGVVALVDAATGRRITFTE 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,499,355
Number of Sequences: 37544
Number of extensions: 354414
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3841085160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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