Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K10
         (1224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +1

Query: 559 PPGGGGXXPPXXPPXGPPXXXGGRXXPPXXPXPPSXXXPP 678
           PP      PP  PP  PP    G   P   P PPS    P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMG--APAAPPLPPSAPIAP 457



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +1

Query: 553 GXPPGGGGXXPPXXPPXGPPXXXGGRXXPPXXPXPPSXXXPP 678
           G PP G G      PP  PP         P  P   S   PP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
 Frame = +1

Query: 562 PGGGGXXPPXXP--PXGPPXXXGGRXXPPXXPXPPSXXXPP 678
           P G    PP  P  P  PP   G    PP  P  P+    P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 559 PPGGGGXXPPXXPPXGPPXXXGG 627
           PPG  G  PP  PP  P    GG
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 595 PPXGPPXXXGGRXXPPXXPXPPS 663
           PP  PP    G   PP  P PP+
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPA 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.153    0.531 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,255
Number of Sequences: 5004
Number of extensions: 16903
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)