Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K04
         (1214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   133   4e-32
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   133   4e-32

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  133 bits (322), Expect = 4e-32
 Identities = 66/121 (54%), Positives = 82/121 (67%)
 Frame = +2

Query: 155 KRGHGXLRVNGRPLALVAPSLLQYKLQAPXLLLGKXKFSXVXISXXXXXXXXXXXXYAIX 334
           K G G ++VNG PL+LV P +L+ K+  P L+ G  KF+ V I             YAI 
Sbjct: 20  KVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIR 79

Query: 335 QAISKALIAFYQQYVXAASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 514
           QAISKA++A+YQ++V   SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSY
Sbjct: 80  QAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSY 139

Query: 515 R 517
           R
Sbjct: 140 R 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  133 bits (322), Expect = 4e-32
 Identities = 66/121 (54%), Positives = 82/121 (67%)
 Frame = +2

Query: 155 KRGHGXLRVNGRPLALVAPSLLQYKLQAPXLLLGKXKFSXVXISXXXXXXXXXXXXYAIX 334
           K G G ++VNG PL+LV P +L+ K+  P L+ G  KF+ V I             YAI 
Sbjct: 20  KVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIR 79

Query: 335 QAISKALIAFYQQYVXAASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 514
           QAISKA++A+YQ++V   SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSY
Sbjct: 80  QAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSY 139

Query: 515 R 517
           R
Sbjct: 140 R 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,152
Number of Sequences: 5004
Number of extensions: 43537
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)