Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_K03
(1222 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 55 1e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 55 1e-07
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 40 0.004
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 38 0.014
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 38 0.014
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 38 0.014
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 38 0.014
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 37 0.025
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 30 2.9
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 30 2.9
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 54.8 bits (126), Expect = 1e-07
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +1
Query: 160 PAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSMYXKSXWXXKAAKAKX 339
P P MSA FFW+ +IK PG+ V ++AK AG W + KS W KAA K
Sbjct: 25 PNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKK 82
Query: 340 QYIVXLXSF 366
+Y V + ++
Sbjct: 83 RYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 54.8 bits (126), Expect = 1e-07
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +1
Query: 160 PAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSMYXKSXWXXKAAKAKX 339
P P MSA FFW+ +IK PG+ V ++AK AG W + KS W KAA K
Sbjct: 25 PNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKK 82
Query: 340 QYIVXLXSF 366
+Y V + ++
Sbjct: 83 RYEVDIANY 91
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 39.9 bits (89), Expect = 0.004
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 160 PAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSMY--XKSXWXXKAAKA 333
P P +A W ++ + +K G + ++AKKAGA W+SM K W KAA+
Sbjct: 558 PNEPKRATTAYIIWFNANRNSMK--EDGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQD 615
Query: 334 KXQYIVXLXSFNAN 375
K +Y + + N
Sbjct: 616 KARYEAEMKEYKKN 629
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 37.9 bits (84), Expect = 0.014
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 145 QAXXXPAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWR--SMYXKSXWXX 318
+A P P +SA FF+ +I+A +P KV ++A++ G +W+ K +
Sbjct: 126 RAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQ 185
Query: 319 KAAKAKXQYIVXLXSFNA 372
KA K +Y + ++ A
Sbjct: 186 KAQADKDRYADEMRNYKA 203
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 37.9 bits (84), Expect = 0.014
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 145 QAXXXPAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWR--SMYXKSXWXX 318
+A P P +SA FF+ +I+A +P KV ++A++ G +W+ K +
Sbjct: 125 RAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQ 184
Query: 319 KAAKAKXQYIVXLXSFNA 372
KA K +Y + ++ A
Sbjct: 185 KAQADKDRYADEMRNYKA 202
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 37.9 bits (84), Expect = 0.014
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 145 QAXXXPAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWR--SMYXKSXWXX 318
+A P P +SA FF+ +I+A +P KV ++A++ G +W+ K +
Sbjct: 127 RAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQ 186
Query: 319 KAAKAKXQYIVXLXSFNA 372
KA K +Y + ++ A
Sbjct: 187 KAQADKDRYADEMRNYKA 204
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 37.9 bits (84), Expect = 0.014
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 145 QAXXXPAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWR--SMYXKSXWXX 318
+A P P +SA FF+ +I+A +P KV ++A++ G +W+ K +
Sbjct: 127 RAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQ 186
Query: 319 KAAKAKXQYIVXLXSFNA 372
KA K +Y + ++ A
Sbjct: 187 KAQADKDRYADEMRNYKA 204
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 37.1 bits (82), Expect = 0.025
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 160 PAXPXXPMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSMY--XKSXWXXKAAKA 333
P P SA W ++ +++K G V ++AKK GA W++M K W KA +
Sbjct: 553 PNAPKRATSAYMQWFLASRNELK--EDGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEED 610
Query: 334 KXQYIVXLXSFNAN 375
K +Y + + N
Sbjct: 611 KSRYEKEMKEYRKN 624
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 178 PMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSM 294
PM+A W K+ NP + +E++K+ GA W+ +
Sbjct: 51 PMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQL 89
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 30.3 bits (65), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 178 PMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSM 294
PM+A W KI P + E++K+ G+ WRS+
Sbjct: 96 PMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSL 134
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 30.3 bits (65), Expect = 2.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 178 PMSASFFWLHSASSKIKAANPGLKVTELAKKAGAIWRSM 294
PM+A W K+ NP + +E++K+ G W+ +
Sbjct: 63 PMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKML 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,174
Number of Sequences: 27780
Number of extensions: 256648
Number of successful extensions: 589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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