Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K03
         (1222 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   2.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   7.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 733 LYIFSLIINTI*KFTCIFIKVLF**NCIYLT*VSVSLLCQVFYKILSEIF 882
           L++ +L I+      C+   ++   NC Y T V   L CQ+ Y +L  +F
Sbjct: 89  LFVINLAISNFLMMFCMSPPMVI--NCYYETWVLGPLFCQI-YAMLGSLF 135


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 733 LYIFSLIINTI*KFTCIFIKVLF**NCIYLT*VSVSLLCQVFYKILSEIF 882
           L++ +L I+      C+   ++   NC Y T V   L CQ+ Y +L  +F
Sbjct: 55  LFVINLAISDFLMMFCMSPPMVI--NCYYETWVLGPLFCQI-YAMLGSLF 101


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 874 HLKFYKTLGIVNLH 833
           HLK + T G+ NLH
Sbjct: 322 HLKIHDTCGVHNLH 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,752
Number of Sequences: 438
Number of extensions: 3235
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41541798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)