Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_K02
(1237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 33 0.61
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 32 0.81
08_01_0059 - 394001-394708 31 2.5
03_05_1166 - 30876802-30876899,30877233-30878685 31 2.5
02_05_0686 - 30900748-30902167,30903442-30904742 30 4.3
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.7
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 7.5
01_06_0146 + 26969011-26969995,26970878-26970930 29 7.5
07_03_1136 + 24218601-24218734,24218769-24219906 29 10.0
02_03_0120 + 15463163-15465250 29 10.0
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 32.7 bits (71), Expect = 0.61
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +1
Query: 748 SGXXXPTHXSRXRXLXXXCKSXAPXWAVCTKPPXXPXGGPYPXTXRPXXXPPXKKXXYPP 927
S P H + + AP V PP GGPY P PP + Y P
Sbjct: 33 SAAPNPNHHPAPAGIFPGAAAPAPHHGVVVPPPMTSGGGPYSY---PPATPPFHRGPYLP 89
Query: 928 P 930
P
Sbjct: 90 P 90
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 32.3 bits (70), Expect = 0.81
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +3
Query: 534 AKGQEPKKGXVXGVXPXAPPPXXASQKSTXXSKXAKPHRNIKXPPVXPXXXPRXPXCSEP 713
A G +PK G P PPP + + PH PP PR P P
Sbjct: 206 AAGIKPKLKGPKGAPPPPPPPPPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPP 265
>08_01_0059 - 394001-394708
Length = 235
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPP 930
PP P P P T RP PP PPP
Sbjct: 27 PPSPPIRPPPPPTPRPYAPPPPSHPLAPPP 56
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 30.7 bits (66), Expect = 2.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 853 PXGGPYPXTXRPXXXPPXKKXXYPPPGXXPWXT 951
P P T P PP ++ YP P PW T
Sbjct: 214 PPKSSSPPTLLPPPPPPPREKMYPNPSGEPWHT 246
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPPGXXP 942
PP P G P P + PP K PPP P
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPP 930
PP P P P RP PP K PPP
Sbjct: 358 PPPPPPPPPPPPPPRPPPPPPPIKKGAPPP 387
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 826 AVCTKPPXXPXGGPYPXTXRPXXXPPXKKXXYPPP 930
A T PP P P P + P PP + PPP
Sbjct: 51 AAPTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPP 85
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.1 bits (62), Expect = 7.5
Identities = 30/122 (24%), Positives = 37/122 (30%), Gaps = 3/122 (2%)
Frame = +3
Query: 585 APPPXXASQKSTXXSKXAKP--HRNIKXPPVXPXXXPRXPXCSEPAAYRXPVXLXP-FGX 755
+PPP A+ S P H PP+ P P P PA+ P P
Sbjct: 7 SPPPEPATDGDDAQSHPPPPTPHPATDPPPISPQN-PTPPPPPLPASAAAPTTPSPNHSG 65
Query: 756 XXXNPXLTXXXSXXPV*VXRPXLGCXHXTPXXPXRXPLPXNXPPXXPTPRKKXXXSXPGQ 935
P + + P P H R P P PP P P + S P
Sbjct: 66 DPSRPIPSQAPAPPPPPTADPSPPLPHDN-----RTPQPRAAPPPAPAPDQPAPPSPPPS 120
Query: 936 XP 941
P
Sbjct: 121 LP 122
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 10.0
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +1
Query: 355 GQRPGXGGXGXGPPSGXAPTDAGG 426
G RP GG G GPPS P AGG
Sbjct: 105 GARPPGGGGGGGPPS--LPPGAGG 126
>02_03_0120 + 15463163-15465250
Length = 695
Score = 28.7 bits (61), Expect = 10.0
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPPGXXP 942
PP GP P +P PP PPP P
Sbjct: 284 PPPTKYIGPMPPNNQPLPPPPSPSPSPPPPSPPP 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,010
Number of Sequences: 37544
Number of extensions: 191274
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -