Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_K02
         (1237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.7  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   9.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   9.0  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   9.0  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   9.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   9.0  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = +3

Query: 531 PAKGQEPKKGXVXGVXPXAPPPXXASQKSTXXSKXAKPHRNIKXPPVXPXXXPRXPXCSE 710
           P     P+K    G  P  PPP    +  T   +   P R    PP      PR P   E
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPR--TPPPRSPPPRRPPMTPPSPQRRPPRTPPSPE 179

Query: 711 P 713
           P
Sbjct: 180 P 180


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
           protein B0496.3a protein.
          Length = 1551

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 504 RXKEHVSKRPAKGQEPKKGXVXGVXPXAPPP 596
           + K  + K+P  G +P+   V  V P +PPP
Sbjct: 825 KVKADLLKQPKDGDKPRNSYVGSVPPRSPPP 855


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
           protein B0496.3b protein.
          Length = 1592

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 504 RXKEHVSKRPAKGQEPKKGXVXGVXPXAPPP 596
           + K  + K+P  G +P+   V  V P +PPP
Sbjct: 866 KVKADLLKQPKDGDKPRNSYVGSVPPRSPPP 896


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPPGXXP 942
           PP  P GG  P +  P   PP      PPP   P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPPGXXP 942
           PP  P GG  P +  P   PP      PPP   P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 579 PXAPPPXXASQKSTXXSKXAKPHRNIKXPPVXPXXXPRXPXCSEP 713
           P  PPP   S      +    P +    PP  P   P  P  SEP
Sbjct: 74  PLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 118


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 579 PXAPPPXXASQKSTXXSKXAKPHRNIKXPPVXPXXXPRXPXCSEP 713
           P  PPP   S      +    P +    PP  P   P  P  SEP
Sbjct: 296 PLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 340


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 841 PPXXPXGGPYPXTXRPXXXPPXKKXXYPPPGXXP 942
           PP  P GG  P +  P   PP      PPP   P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,550,851
Number of Sequences: 27780
Number of extensions: 161572
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)