Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J21
         (1162 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...   150   2e-36
AF067616-1|AAC19191.2|   61|Caenorhabditis elegans Hypothetical ...    30   3.6  
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    29   6.3  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score =  150 bits (364), Expect = 2e-36
 Identities = 67/92 (72%), Positives = 76/92 (82%)
 Frame = +2

Query: 179 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 358
           L  KE+GQEY QV+KMLGNGR++  CFDG +R+CHIRGKLRKKVWIN GDIIL+GLRDYQ
Sbjct: 26  LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIILVGLRDYQ 85

Query: 359 DAKADVILKYTPDEARNLKTYGEFPETVRINE 454
           D K DVILKYTPDEAR LK  G  PE  ++NE
Sbjct: 86  DDKGDVILKYTPDEARRLKNEGLIPENAKLNE 117


>AF067616-1|AAC19191.2|   61|Caenorhabditis elegans Hypothetical
           protein F29C4.4 protein.
          Length = 61

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 882 IHFIVWLLNKRLYSG*CLFNLYTF-LTYLNFNFRKYN 775
           IH ++ L+NK+L+    LF  + F L  LNF F K N
Sbjct: 9   IHKLIVLVNKKLFQPLDLFQTFFFCLKALNFTFEKRN 45


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 99  KTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP 212
           KT RKTK+++ KI      K ++ +  WS+ ++ K  P
Sbjct: 104 KTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,062,214
Number of Sequences: 27780
Number of extensions: 358125
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)