Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J21
         (1162 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    28   0.18 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    28   0.18 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    28   0.18 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    28   0.18 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   1.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   5.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   6.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   9.0  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 831 LFNLYTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 721
           L N Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 831 LFNLYTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 721
           L N Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 831 LFNLYTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 721
           L N Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 831 LFNLYTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 721
           L N Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 798 NFNFRKYNNGRNVEKSNFR-INIFQ 727
           N+N++ YNN  N +K  +  INI Q
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQ 332


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 798 NFNFRKYNNGRNVEKSNFR-INIFQ 727
           N+N++ YNN  N +K  +  INI Q
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQ 343


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 704 INNTIMFQLVFLQMNFEDWT 645
           I N +  QL+   M F+DWT
Sbjct: 67  IANNVTMQLLPKLMEFDDWT 86


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 650 WTITSRYK*KLKSCLITEGILQRLTANIINKAKNY 546
           WTITS ++  LK  L+     +   A  +   KN+
Sbjct: 72  WTITSYHRINLKCSLVEFSENKNCNAGSLTVKKNF 106


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 286 PRETTKKSVDKSRRHNINRPTRLSRCES 369
           PR T  K    +R  +  RP+R + CES
Sbjct: 385 PRSTHLKVSGINRVGSTRRPSRRNSCES 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,112
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39403827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)