Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J20
         (1179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   249   5e-67
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   248   2e-66
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   5.1  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  249 bits (610), Expect = 5e-67
 Identities = 124/268 (46%), Positives = 166/268 (61%), Gaps = 2/268 (0%)
 Frame = +2

Query: 140 SRSQVKFKRRRXGXTDXXARKRLVVQXKHKYNTPKYRLIVRLSNKXVTCQVAYSRIEGDH 319
           SR Q K++RRR G TD  ARKRL+ Q K+KYN PKYRL+VR SN+ VTCQ+  SR+ GD+
Sbjct: 14  SRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDY 73

Query: 320 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 499
           ++  A+S ELPRYG+K GL N+ AAY+TG                              E
Sbjct: 74  VLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTE 133

Query: 500 PVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAE 679
            +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E
Sbjct: 134 AIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 193

Query: 680 VHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYXKAHEAIRADPS- 856
             R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR DPS 
Sbjct: 194 TLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSF 253

Query: 857 -HXXXXXXXXXXXXXRWNKRKLTXAXRK 937
                          ++ +RKLT   RK
Sbjct: 254 QKSGKDAAAFKAESLKYTQRKLTAEERK 281


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  248 bits (606), Expect = 2e-66
 Identities = 118/239 (49%), Positives = 157/239 (65%)
 Frame = +2

Query: 140 SRSQVKFKRRRXGXTDXXARKRLVVQXKHKYNTPKYRLIVRLSNKXVTCQVAYSRIEGDH 319
           SR Q K++RRR G TD  ARKRL+ Q K+KYN PKYRL+VR SN+ VTCQ+  SR+ GD+
Sbjct: 14  SRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDY 73

Query: 320 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 499
           ++  A+S ELPRYG+K GL N+ AAY+TG                              E
Sbjct: 74  VLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTE 133

Query: 500 PVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAE 679
            +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E
Sbjct: 134 AIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 193

Query: 680 VHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYXKAHEAIRADPS 856
             R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR DPS
Sbjct: 194 TLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPS 252


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 431 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 339
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,308
Number of Sequences: 5004
Number of extensions: 62888
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)