Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J18
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.049
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.60 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   3.2  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   5.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 33/94 (35%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
 Frame = -1

Query: 768 GGXRGGFPGGXXWXFXXPXGXXPPXXGGGXFXXFPGGGGXGEXAXXRXLFRXXGPLG-AL 592
           GG  GGF GG         G  PP  GG  F  F G GG G        F   GP G   
Sbjct: 187 GGGFGGFGGG--------SGGPPPGPGG--FGGFGGFGGEGHHHGGHGGF-GGGPGGFEG 235

Query: 591 GXXXFSGGXPXFGGXXXXPPXGGGNXXPXPKXRG 490
           G   F GG   FGG       G G     P   G
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 417 NPPPPXXXGXGFWAPXPXPPPXPP 488
           NPPPP     GF  P   PPP PP
Sbjct: 8   NPPPPPPP-PGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 847 PXXGFSPXXGXPPPPPXG 900
           P  GF P    PPPPP G
Sbjct: 14  PPPGFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
 Frame = +3

Query: 864 PXXGXAPPPPXGGVXP---XPPPXXPG 935
           P     PPPP  G  P    PPP  PG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 864 PXXGXAPPPPXGGVXPXPPPXXPGXG 941
           P     PPPP G   P  PP  P  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 420 PPPPXXXGXGFWAPXPXPPPXP 485
           PPPP   G     P P PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +2

Query: 458 PXPXPPPXTPXPRXFGXGXXFPPPXGGXXXXPPXXGXPP 574
           P P P P  P     G     PPP G     PP    PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 420 PPPPXXXGXGFWAPXPXPPPXPP 488
           PPPP   G G     P PPP PP
Sbjct: 765 PPPPGVAGAG-----PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +3

Query: 864 PXXGXAPPPPXGGVXPXPPPXXPGXGXPXXGXXXXXXXPP 983
           P     P PP   +   PPP  P  G    G       PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 22/92 (23%), Positives = 23/92 (25%), Gaps = 2/92 (2%)
 Frame = +3

Query: 654  PPPXEXXQKXPPXXGGGXPPXXFXXXRXXPLETPPGXPXXPXLPXTGXXXXXXXXXXXXX 833
            P P       P     G PP         P+  P G P  P                   
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181

Query: 834  XSXXPXXWVFPXXGXAPPPPXG--GVXPXPPP 923
                      P    APP P    GV P PPP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
 Frame = +3

Query: 654 PPPXEXXQKXPPXXGGGXPPXXFXXXRXXPLETP-PGXPXXPXLP 785
           PPP    Q  PP      PP  +      P + P P     P  P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAP 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,579
Number of Sequences: 5004
Number of extensions: 44350
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)