Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J18
         (1281 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    29   0.29 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    28   0.51 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   1.6  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   4.7  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 934 PGXXGGGXGXTPPXGGGGAXPXXG 863
           PG  GGG G   P GGGG+    G
Sbjct: 200 PGAGGGGSGGGAPGGGGGSSGGPG 223



 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 946 GXPXPGXXGGGXGXTPPXGGGG 881
           G   PG  GG  G   P GGGG
Sbjct: 208 GGGAPGGGGGSSGGPGPGGGGG 229


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = +1

Query: 523 PPPRGGXXXPPKXGXXPGKXXXPKGPQRAXXPEKGPXXGXFPXPPPPXKXXKXXPPXXGG 702
           PPP      PP+ G  PG    P        P   P  G    PPP        PP   G
Sbjct: 79  PPPT--MNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGM--RPPPMMVPTMGMPPMGLG 134

Query: 703 XXPP 714
             PP
Sbjct: 135 MRPP 138


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
 Frame = +1

Query: 475 PXXPXXPVFRXGXXVSPPPRGGXXXPPKXGXXPGKXXXPKG---PQRAXXPEKGPXXGXF 645
           P  P  P          PPR G    P+     G    P G   P R   P  G   G  
Sbjct: 183 PGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMP-PGAVPGMQ 241

Query: 646 P--XPPPPXKXXKXXPPXXGGXXP 711
           P   P PP       PP  G   P
Sbjct: 242 PGMQPRPPSAQGMQRPPMMGQPPP 265



 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 880 PPPPPXGGXFPXPP 921
           P PP  GG +P PP
Sbjct: 209 PQPPRPGGMYPQPP 222



 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 526 PPRGGXXXPPKXGXXPGKXXXPKG-PQRAXXPEKGPXXGXFPXP 654
           P +GG    P  G  P     P G PQ +  P      G  P P
Sbjct: 303 PMQGGAPGGPPQGMRPNFYNRPMGDPQTSRPPSGNDNMGGGPPP 346


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 864 PXXGXAPPPPXGGVXPXPPPXXP 932
           P     PPPP G V   PP   P
Sbjct: 527 PLGPPPPPPPGGAVLNIPPQFLP 549



 Score = 24.2 bits (50), Expect = 8.3
 Identities = 20/66 (30%), Positives = 20/66 (30%)
 Frame = +3

Query: 879  APPPPXGGVXPXPPPXXPGXGXPXXGXXXXXXXPPRXKXXFXPPGGXXPWXXXXFPXPGX 1058
            APPPP     P  PP  P  G P  G        P         GG  P      P P  
Sbjct: 584  APPPPP----PMGPPPSPLAGGPLGGPAGSRPPLPNLLGF----GGAAPPVTILVPYPII 635

Query: 1059 FXXPXP 1076
               P P
Sbjct: 636  IPLPLP 641



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 452 LGPXPXPPP 478
           LGP P PPP
Sbjct: 528 LGPPPPPPP 536



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 521 PPPXGGXXXXPPXXGXPP 574
           PPP G     PP    PP
Sbjct: 534 PPPGGAVLNIPPQFLPPP 551


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,795
Number of Sequences: 2352
Number of extensions: 17629
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 147148920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)