Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J15
         (1270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.063
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.59 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 886 PPSXXGGGXPPXPPXPXXPXRGXXAPPP 969
           PP+   GG PP PP P     G   PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 908 PPPXXLGGXAPXPPXGSXAXXXPXFPP 828
           PP   +GG  P PP    A   P  PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 886 PPSXXGGGXPPXPPXP 933
           PP   G G PP PP P
Sbjct: 767 PPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
 Frame = +1

Query: 778 PXXPPXXKPGXPXPXRXGGNXGXSXAXDPX----GGXGAXPPSXXGGGXPPXPPXPXXPX 945
           P  PP  +     P    G+   S    P        G+ P    G   PP PP    P 
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 946 RGXXAPPPXGGXXGKNTP 999
            G   PP        N P
Sbjct: 372 TGRQPPPLSSSRAVSNPP 389



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +1

Query: 877 GAXPP---SXXGGGXPPXPPXPXXPXRGXXAPPPXGGXXGKNTP 999
           G  PP   S      PP PP P  P R   A PP G     +TP
Sbjct: 373 GRQPPPLSSSRAVSNPPAPP-PAIPGRSAPALPPLGNASRTSTP 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.146    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,731
Number of Sequences: 5004
Number of extensions: 20028
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)