Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J12
         (1207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    50   9e-07
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   3.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   6.9  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   9.1  

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +2

Query: 629 HGLFQHVCLEYELVLADGSVVNCSKDENADLFYAVPWSYGTLGFLTSVVIKVIPA 793
           H +  H      ++LADGS+V CS++   D+F A   S G LG +  + I V+PA
Sbjct: 140 HQVLPHYIKSMRIMLADGSIVTCSRELQKDMFAAAQVSLGALGVIVDITISVVPA 194


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 566 TLEQRAAPSLAAPMCGTADPSSLEARNGLSYSLCPPPR 453
           T     AP+ A+P+  T  PS+    NG S S    PR
Sbjct: 392 TSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPR 429


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = -2

Query: 627 TCDVVSTPVPITRPPTVSWSNSGTTGSAKPS-GANVRDS*PIVTRGSQRT----VIFSLS 463
           T    ST    T PP  S S++GT+ S  PS   +   S  I   G+  T     +   S
Sbjct: 304 TVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363

Query: 462 TSKTST 445
           TS TST
Sbjct: 364 TSSTST 369



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = -2

Query: 687 TEPSARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPSGANVRDS*P 508
           T P   TSS S      S  + D  S P+P T     + ++   TG +      +  + P
Sbjct: 137 TVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196

Query: 507 IVTRGSQRTVIFSLSTSKTST 445
             +  S    I   STS T T
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDT 217


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 659 YELVLA---DGSVVNCSKDENADLFYAVPWSYGTLGFLTSVVIK 781
           ++LVL    DG+V+  S+     +   +P++ GTLGFLT   +K
Sbjct: 141 FDLVLTLGGDGTVLYTSRLFQRTVPPIMPFAMGTLGFLTHFDVK 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,774,366
Number of Sequences: 5004
Number of extensions: 69023
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)