Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J12
         (1207 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   7.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   7.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 621 RTSTGFFSMCAWSTSWFSPTALSLTVVRTKTLIYFTLFRGLT 746
           R   G++  C W   W   T      V T  +I F   + LT
Sbjct: 480 RDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLT 521


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 621 RTSTGFFSMCAWSTSWFSPTALSLTVVRTKTLIYFTLFRGLT 746
           R   G++  C W   W   T      V T  +I F   + LT
Sbjct: 533 RDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLT 574


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -2

Query: 588 PPTVSWSNSGTTGSAKPSGANVRDS*PIVTRGSQRTVIFSLSTSKTSTRLICMLVNVXLY 409
           P  V+    GTT S + +G+    +   V +  +     SLS  + + R + +++ V  +
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERRAARTLGVIMGV--F 336

Query: 408 MLC 400
           ++C
Sbjct: 337 VVC 339


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -2

Query: 588 PPTVSWSNSGTTGSAKPSGANVRDS*PIVTRGSQRTVIFSLSTSKTSTRLICMLVNVXLY 409
           P  V+    GTT S + +G+    +   V +  +     SLS  + + R + +++ V  +
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERRAARTLGVIMGV--F 336

Query: 408 MLC 400
           ++C
Sbjct: 337 VVC 339


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -2

Query: 588 PPTVSWSNSGTTGSAKPSGANVRDS*PIVTRGSQRTVIFSLSTSKTSTRLICMLVNVXLY 409
           P  V+    GTT S + +G+    +   V +  +     SLS  + + R + +++ V  +
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERRAARTLGVIMGV--F 336

Query: 408 MLC 400
           ++C
Sbjct: 337 VVC 339


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 352 DSSLHSPANMANNVFST 402
           D++L S  N+ NNV+ST
Sbjct: 395 DNALASHNNLLNNVYST 411


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 823 RVIMYADILLSRNNFDHN*SQKSKGAVRPRNSVK 722
           RV++    + SR N  HN    + GA++ R  +K
Sbjct: 44  RVLLRGQCISSRRNGRHNVHSLAFGAIQLRQLLK 77


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 620  SHVHGLFQHVCLEYELVLAD 679
            +H +G+ Q   L YE +LAD
Sbjct: 1138 THSNGIIQGYKLHYEPILAD 1157


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 620  SHVHGLFQHVCLEYELVLAD 679
            +H +G+ Q   L YE +LAD
Sbjct: 1134 THSNGIIQGYKLHYEPILAD 1153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,466
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)