Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_J10
(1197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 323 3e-89
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 33 0.10
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 30 0.73
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 28 3.0
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 3.9
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 27 3.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 6.8
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 323 bits (793), Expect = 3e-89
Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)
Frame = +3
Query: 216 KXHLITRNLQXVLGDDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADFLKAGCEV 395
K LITRNLQ VLG + EIL +RD+ +YWG+A TGRPH YFVPM+K+ADFLKAG V
Sbjct: 8 KYELITRNLQEVLGAKMIREILNERDISLYWGSAPTGRPHCGYFVPMMKLADFLKAGVHV 67
Query: 396 TILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQLSKEY 575
T+L AD+HA+LDNMKAP EL+ R +YYE +K++L S+ +P+EKL+FV G+ YQL ++Y
Sbjct: 68 TVLLADVHAFLDNMKAPMELVQHRVRYYEIIVKSILKSLNIPIEKLRFVIGSSYQLKEDY 127
Query: 576 TLDVYRLSSVVTEHDAKKAGAEVVKQVEHPLLSGLLYPNLQALDEEYLKVDAQFGGVDQR 755
TLD +RL++ TEH A++AGAEVVKQV PLLS L+YP +QALDE+YL VD QFGGVDQR
Sbjct: 128 TLDNFRLAASTTEHTARRAGAEVVKQVASPLLSSLIYPGMQALDEQYLGVDVQFGGVDQR 187
Query: 756 KIFTMSEKFLPQLGYAKRIHLMNPMVPGLTGGKMSAS-EADSKIDLLDTPTNVKKS*KS 929
KIF M+E+ LP LGY KR HLMNPMVP L GGKMS+S A++KID+LD P V K +S
Sbjct: 188 KIFVMAEEVLPVLGYKKRGHLMNPMVPSLAGGKMSSSAAANAKIDILDDPKTVNKKIRS 246
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 913 KKAKKAFCEPGNISDNGVXSXTKHVVXPLMK 1005
KK + AFCEPG + +NG + K+V P M+
Sbjct: 242 KKIRSAFCEPGVVEENGCLAFLKYVSFPAME 272
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 744 VDQRKIFTMSEKFLPQLGYAKRIHLMNPMVPGLTG--GKMSASEADSKIDLLDTPTNVK 914
+DQ F ++ +L + K L + P L G KMSAS+ S I + DTP +K
Sbjct: 237 IDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIK 295
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 450 ELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQ 560
ELL L T+ E + A T G+P ++ ++G Y+
Sbjct: 161 ELLTLATELAERLLPAFRTPTGIPFARINLMKGVAYR 197
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 708 EEYLKVDAQFGGVDQRKIFTMSEKFLPQLGYAKRIHLMNPMVPG 839
+E++ +D Q + Q ++ + + YA +IH++NP+ G
Sbjct: 52 KEHVSLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIPLG 95
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 540 VRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVKQVEHPLL 671
+RG E+ + YT D+ + S++ T D +A K+V P +
Sbjct: 155 LRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFV 198
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +3
Query: 459 ALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGA 638
A+ + YEAA++A+LT P+E F+ ++E + + ++ + A
Sbjct: 22 AIPLENYEAALRAILTGKASPVETASFLASLHLTKAEEVPDILMQTVQILKSYSTPIANI 81
Query: 639 EVV 647
E+V
Sbjct: 82 EMV 84
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 6.8
Identities = 32/127 (25%), Positives = 58/127 (45%)
Frame = -3
Query: 730 ASTFKYSSSKAWRFG*RSPLSNGCSTCFTTSAPAFLASCSVTTDDNL*TSNVYSLLSWYS 551
+S+ SSS A S S S+ FT+ A + + V++ +S+ SL S S
Sbjct: 44 SSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSS 103
Query: 550 VPRTNFSFSSGTPIDVSIAFIAAS*Y*VRSAKSSQGAFILSK*ACKSANNIVTSQPAFKK 371
T+ S +S T S A ++S V S+ SS +S + ++++ +S ++
Sbjct: 104 ATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSG----MSSSSLSHSSSVPSSSSSYHS 159
Query: 370 SAIFNIG 350
S++ G
Sbjct: 160 SSMTTSG 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,929,953
Number of Sequences: 5004
Number of extensions: 75219
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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