Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_J10
(1197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291... 46 6e-05
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 45 1e-04
12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600... 36 0.083
08_01_0611 - 5372966-5372992,5373965-5374024,5374260-5374365,537... 34 0.19
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 33 0.59
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 32 1.0
04_04_0340 + 24517562-24520318 31 1.4
07_01_0393 + 2978030-2978189,2978283-2978671 29 5.5
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 9.6
>08_01_0325 +
2917942-2918193,2919057-2919340,2919453-2919549,
2919677-2919712,2920570-2920715,2920882-2920987,
2921160-2921219,2921848-2921898
Length = 343
Score = 46.0 bits (104), Expect = 6e-05
Identities = 44/189 (23%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Frame = +3
Query: 210 QXKXHLITRNLQXVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAY-FVPMLKIADFLKA 383
Q + L+ + + +D+L +L+++ + I Y G +GR H+A V + + ++A
Sbjct: 39 QDRFELLRGIGEECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRA 98
Query: 384 GCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQL 563
GC+V I AD A L+N K ++ ++T + + + G+ L+ ++F+ +E ++
Sbjct: 99 GCKVKIWIADWFAQLNN-KMGGDIKKIQT--VGRYMIEIWRAAGMNLDGVEFLWSSE-EI 154
Query: 564 SKEYTLDVYRLSSVVTEHDAKKAG--AEVVKQVEHPLLSG--LLYPNLQALDEEYLKVDA 731
+K + + +++ K+ +++ + + L+ + YP +Q D +LK D
Sbjct: 155 NKRANEYWPLVMDIARKNNVKRIMRCCQIMGRNDSDELTAAQIFYPCMQCADIFFLKADI 214
Query: 732 QFGGVDQRK 758
G+DQRK
Sbjct: 215 CQLGMDQRK 223
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 44.8 bits (101), Expect = 1e-04
Identities = 44/189 (23%), Positives = 94/189 (49%), Gaps = 6/189 (3%)
Frame = +3
Query: 210 QXKXHLITRNLQXVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAY-FVPMLKIADFLKA 383
Q + L+ + + +D+L +L+++ + I Y G +GR H+A V + + ++A
Sbjct: 35 QDRFELLRGIGEECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRA 94
Query: 384 GCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQL 563
GC+V I AD A L+N K +L ++T + + + G+ L+ ++F+ +E ++
Sbjct: 95 GCKVKIWIADWFAQLNN-KMGGDLKKIQT--VGRYMIEIWRAAGMNLDGVEFLWSSE-EI 150
Query: 564 SKEYTLDVYRLSSVVTEHDAKK--AGAEVVKQVEHPLLSG--LLYPNLQALDEEYLKVDA 731
+ + + +++ K+ +++ + + L+ + YP +Q D +LK D
Sbjct: 151 NNRANEYWPLVMDIACKNNVKRIMRCCQIMGRNDSDELTAAQIFYPCMQCADIFFLKADI 210
Query: 732 QFGGVDQRK 758
G+DQRK
Sbjct: 211 CQLGMDQRK 219
>12_02_0664 -
21659497-21659547,21659750-21659860,21659971-21660039,
21660442-21660513,21660669-21660749,21661256-21661348,
21661581-21661733,21661846-21661897,21662033-21662218,
21662830-21662949,21663059-21663297
Length = 408
Score = 35.5 bits (78), Expect = 0.083
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 744 VDQRKIFTMSEKFLPQLGYAKRIHLMNPMVPGLTG--GKMSASEADSKIDLLDTPTNVK 914
+DQ F M+ P++GY K + + P L G KMSAS+ +S I + D+ +K
Sbjct: 248 IDQDPYFRMTRDVAPRIGYQKPSLIESRFFPALQGENTKMSASDPNSAIYVTDSAKEIK 306
>08_01_0611 -
5372966-5372992,5373965-5374024,5374260-5374365,
5374481-5374626,5375654-5375733,5375962-5376064,
5376597-5376675,5376854-5377134,5377374-5377548,
5377645-5377679
Length = 363
Score = 34.3 bits (75), Expect = 0.19
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 3/188 (1%)
Frame = +3
Query: 357 LKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLK 536
+ + ++AGC V I D A+L+N K ++ ++T + + SIG+ + ++
Sbjct: 76 IHVRKMVEAGCRVKIWIDDWSAFLNN-KLGGDMEKIQT--VGRYMIEVWKSIGMNHDGVE 132
Query: 537 FVRGTEYQLSKEYTLDVY--RLSSVVTEHDAKKAGAEVVKQVEHPLLSGLLYPNLQALDE 710
F+ + S+ D Y R+ + T K +++ + P P +Q
Sbjct: 133 FLCSSAEINSRA---DEYWPRVMGISTHR--KIGVVRELRECKKPTAQ-FFNPCMQCAGI 186
Query: 711 EYLKVDAQFGGVDQRKIFTMSEKFLPQLGYAKRIHLMNPMVPGLTG-GKMSASEADSKID 887
+L+ D G+DQ ++ ++ + K I L + ++PGL G KMSAS+ S I
Sbjct: 187 FFLEADICQMGMDQHEVNKLATTYSDNRQEKKPIILSHYLLPGLKGQNKMSASDPASAIF 246
Query: 888 LLDTPTNV 911
+ D +
Sbjct: 247 MDDEKAEI 254
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 32.7 bits (71), Expect = 0.59
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 744 VDQRKIFTMSEKFLPQLGYAKRIHLMNPMVPGLTG--GKMSASEADSKIDLLDTPTNVK 914
+DQ F M+ P+LG+ K + + P L G KMSAS+ +S I + D +K
Sbjct: 164 IDQDPYFRMTCDVAPKLGFQKPSLIESRFFPALQGESTKMSASDPNSAIYVTDNSKQIK 222
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 31.9 bits (69), Expect = 1.0
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +3
Query: 255 GDDKLTEILKQRDLKIYW---GTATTGRPHVAYFVPMLKIADF-LKAGCEVTILFADLHA 422
GD K E+L+ K+ W TG P Y LK D + +V + A +
Sbjct: 353 GDVKFAEVLEMMGAKVTWTDTSVTVTGPPREPYGKKHLKAVDVNMNKMPDVAMTLAVVAL 412
Query: 423 YLDNMKAPWELLALRTQYYE--AAIKAMLTSIGVPLEK 530
+ D A ++ + R + E AI+ LT +G +E+
Sbjct: 413 FADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEE 450
>04_04_0340 + 24517562-24520318
Length = 918
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 847 EVKCQPLKLIVK*IYWTHQQMLKKAKKAFCEPGNISDNG 963
E++C PL V+ +W + L+K KK + GNISD G
Sbjct: 816 ELRCFPL---VELPHWVSPEKLRKLKKLYISGGNISDLG 851
>07_01_0393 + 2978030-2978189,2978283-2978671
Length = 182
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 966 VVXH*ACXLPTDEEGXXXINVLPXMXGCY 1052
VV AC LP ++G I +P + GCY
Sbjct: 103 VVAEQACYLPCTDDGLPVIGEMPGVKGCY 131
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 612 EHDAKKAGAEVVKQVEHPLLSGLLYPNLQALDEEYL-KVDAQFGGVDQRKIF 764
E DA +V + ++H SGL++ + + ++YL K D F G R++F
Sbjct: 226 EFDASYVYEDVNQSIQHVHRSGLIHRKILSEPQKYLIKNDEHFDGNSWRELF 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,438,544
Number of Sequences: 37544
Number of extensions: 428354
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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