Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J09
         (1245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   2.3  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   4.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   9.5  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 623 FQEKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDEKQCKEMSVTQVCVVKVLETCQ 802
           F + Q  + +  N  + + AN DLN+        +  D+K+ KE   +Q   VK +E   
Sbjct: 179 FIQHQESVMEAANSMSMKLANIDLNAPKIQRPSVIKKDKKEKKEGKPSQEASVKSVEKAP 238

Query: 803 K 805
           K
Sbjct: 239 K 239


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 344 LQTLVNMEILQQELEEAK 397
           LQTL +M I QQ++EEAK
Sbjct: 165 LQTLASMRISQQKIEEAK 182


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 806 ASGTSPAPSPRKLALRTSPCIASHQRIKLVNCREIKSSNQS*RSALLSDCSTSASQTAS 630
           +S +S +PS       TSP  +S       +     SS+ S  S+  S  S+S+S ++S
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,722,501
Number of Sequences: 5004
Number of extensions: 68628
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)