Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J09
         (1245 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80455-2|AAB37882.2|  420|Caenorhabditis elegans Elav-type rna b...    30   3.0  
U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna b...    30   3.0  
U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type ribon...    30   3.0  
EF523770-1|ABS18836.1|  513|Caenorhabditis elegans ELAV-type RNA...    30   3.0  
EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA...    30   3.0  
Z77660-10|CAB01180.1|  283|Caenorhabditis elegans Hypothetical p...    29   6.8  
AF078785-5|AAC27088.1|  192|Caenorhabditis elegans Hypothetical ...    29   6.8  
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    29   9.0  

>U80455-2|AAB37882.2|  420|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform b protein.
          Length = 420

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 569 FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 715
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 346 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 397


>U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform a protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 569 FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 715
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 510 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561


>U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type
           ribonucleoprotein protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 569 FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 715
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 510 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561


>EF523770-1|ABS18836.1|  513|Caenorhabditis elegans ELAV-type RNA
           binding protein variantE protein.
          Length = 513

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 569 FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 715
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 439 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 490


>EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA
           binding protein variantA protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 569 FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 715
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 510 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561


>Z77660-10|CAB01180.1|  283|Caenorhabditis elegans Hypothetical
           protein F38H4.8 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 38  TSRSNTQKVTAFYNTVNKKINIKMNLKVLILSAIIGTAYA 157
           T+ S + K    +NT    +N   N+KV +++ + GTA A
Sbjct: 85  TTESGSDKHNEIFNTCGDMMNFIRNMKVPVIAEVNGTAAA 124


>AF078785-5|AAC27088.1|  192|Caenorhabditis elegans Hypothetical
           protein C04E12.2 protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +2

Query: 629 EKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDEKQCKEMSVTQVC 775
           E      +CY +   +  N DL  +SPD L    F    C +  V + C
Sbjct: 117 ENSKPKPECYEKWDTKLVNEDLTEVSPDKLCKKMFGTDNCMKKVVKETC 165


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/94 (19%), Positives = 40/94 (42%)
 Frame = +2

Query: 617 ECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDEKQCKEMSVTQVCVVKVLET 796
           E   E  S L++   +TA +   + +     D +      + + K +   ++C  K  +T
Sbjct: 252 ELASEDFSGLERLLEETARERIYYVITDAGHDKISR----DMEIKAI-FEEICAEKAFQT 306

Query: 797 CQKPAAANIVDSLFKFLVKKTPCKAYLKAEENAP 898
           C+K A      +L K +++ T  +  ++ +   P
Sbjct: 307 CEKDAIYRTYSTLVKKVLRDTTLRTGIRCDGRRP 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,948,329
Number of Sequences: 27780
Number of extensions: 401535
Number of successful extensions: 1181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3453805598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)