Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J07
         (1237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    73   6e-13
Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    34   0.24 
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    33   0.31 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    30   3.9  
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    29   5.1  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 72.5 bits (170), Expect = 6e-13
 Identities = 26/62 (41%), Positives = 35/62 (56%)
 Frame = +2

Query: 194 FPXQNQXRHCYQSYVDFHRCQXVRGXKYXPCYXFKRVYRSLCPNEWVDKWDNQRAEGTFA 373
           FP   + R C+  YVDFHRC  + G  Y PC  F+ VY+  CP  W ++WD   +EG F 
Sbjct: 57  FPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGRFP 116

Query: 374 GR 379
            +
Sbjct: 117 AK 118


>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +3

Query: 138 PASAQIARRPQNSTFRPTXSLTKIXRGTATKVTWTSTVAXKFAAXNTXHATXSSXCTGLS 317
           P +A  ++ P  +   P  S     RG   K      +A K  A     A  S   + +S
Sbjct: 380 PKAASASKAPIRAPI-PAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVS 438

Query: 318 APMSGSTSGTTSAPKAPSPVGFR 386
           AP + + + T+SAP A +P   R
Sbjct: 439 APKATAPASTSSAP-ATAPEASR 460


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +3

Query: 138 PASAQIARRPQNSTFRPTXSLTKIXRGTATKVTWTSTVAXKFAAXNTXHATXSSXCTGLS 317
           P +A  ++ P  +   P  S     RG   K      +A K  A     A  S   + +S
Sbjct: 358 PKAAPASKAPTRAPI-PARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVS 416

Query: 318 APMSGSTSGTTSAPKAPSPVGFR 386
           AP + + + T+SAP A +P   R
Sbjct: 417 APKATAPASTSSAP-ATAPEASR 438


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 186  PTXSLTKIXRGTATKVTWTSTVAXKFAAXNTXHATXSSXCTGLSAPMSGSTSGTTSAPKA 365
            P  S T       T  T +ST+     + +T H T S   +G ++P + S +G+T    +
Sbjct: 1413 PVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTGSTVTMGS 1472

Query: 366  PSPVG 380
             S  G
Sbjct: 1473 SSTSG 1477


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +3

Query: 174 STFRPTXSLTKIXRGTATKVTWTSTVAXKFAAXNTXHATXSSXCTGLSAPMSGSTS---- 341
           ST  P+ S T +   T T    TST A   +       T ++  T  + P S STS    
Sbjct: 85  STEPPSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQT 144

Query: 342 GTTSAPKAPSPVGFRS*TFPM 404
            TT+AP+  S     S T P+
Sbjct: 145 TTTTAPETTSTEAPSSSTTPV 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,400,233
Number of Sequences: 27780
Number of extensions: 255806
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)