Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_J06
(1196 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 35 0.019
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.045
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.10
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.24
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 31 0.24
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.32
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.55
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.97
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 1.3
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 2.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 2.2
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 2.2
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 28 2.2
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 28 3.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 28 3.0
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 5.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 5.2
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 5.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 6.8
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 6.8
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 9.0
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 35.1 bits (77), Expect = 0.019
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 88 NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLN 219
N+ F DGK+ +T ++DG +K+WD +++ Y S +N
Sbjct: 85 NVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNYDHKSPVN 128
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.045
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 106 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 201
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.10
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 329 IVLGTTNGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNI 505
++ G NG +++YS + V KH + AL S K L S + D VY W++
Sbjct: 203 VLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDL 261
Query: 506 EDGSVKQTYN 535
G TYN
Sbjct: 262 NTGDAISTYN 271
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 106 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSYVPTVD 246
FS+ G++ T + DG ++ WD T L + S ++ PT D
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPTGD 626
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 109 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPXSSLNIT 225
+ DG+Y T D LK+WD T L YTP + +T
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTPTPAQRLT 313
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 31.1 bits (67), Expect = 0.32
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 338 GTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGS 517
G+ +G + ++ S+ W H V L +S + + SC D VY N +DG
Sbjct: 83 GSGDGAVKLWDASER--CERWTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGK 139
Query: 518 VKQTY 532
VK++Y
Sbjct: 140 VKRSY 144
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 106 FSEDGKYYSTITKDGRLKIWD 168
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +1
Query: 103 MFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSYVPTVDNRQSISFKLKRE 282
MFS DG++ + + D ++IW + +++Q + S+ ++ P D + +S L
Sbjct: 424 MFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSP--DGKYLVSGSLDNT 481
Query: 283 PKQFKCE 303
K ++ +
Sbjct: 482 IKLWELQ 488
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.97
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 106 FSEDGKYYSTITKDGRLKIWDTETN 180
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 332 VLGTTNGKLLIYSISQAKIINVWVPAKHFSA 424
++G+ G L +Y+I ++ ++VW F A
Sbjct: 481 LIGSRTGSLALYNIGESNYLSVWRRIHEFDA 511
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 106 FSEDGKYYSTITKDGRLKIWDTE 174
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.3 bits (60), Expect = 2.2
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -1
Query: 341 CLILCIGTHFRLYSHLNCFGSLLSLKLID*RLSTVGT*EVMLSEDXGVYSCLSTLVSVSH 162
CL L T FR SH++ L S+ L LST+ T +M +Y L +L H
Sbjct: 732 CLALTKHTGFRRSSHIS--SDLRSIALC--YLSTLPTPLLMRY----IYPTLYSL----H 779
Query: 161 ILSLPSLVIVE*--YFPSSENIASAMFHCFGTGLIDTRI 51
+ + + + E PS+ N+ SA+ FG L+DT I
Sbjct: 780 DMPIEAGTVTEQGVVLPSALNLTSALLQSFGLYLVDTHI 818
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 776 ERLLSFWDVTVTDESTQNNNDEPTPNKRHKRKHSAVPVQPTPMYSFVLE 922
ER + W+V + + S + +PNK K+KH A P +L+
Sbjct: 176 ERRFTEWNVPLRETSPSPSETADSPNKLPKQKHPAYSFVTLPKREEILK 224
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 91 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSS 213
++ +S DG+ T DG++K+WD + +T +S
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTS 382
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 2.2
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Frame = +2
Query: 401 VPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISI---ENNTKQGSN 571
V AK F + L+ SR+ S + S ++ ED +++ +++ E +T+Q N
Sbjct: 126 VQAKDFHSARKKLE-SRRQAYESLLQKS--FKEKKEDSRLEEDIRLALYKFEESTEQVKN 182
Query: 572 -INAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDA 748
+ A+K + +Q+++ L+ Y+L+ + K+ T I + ++ SQ ++ +
Sbjct: 183 RMIALKDVEADQYQQLTELIV--YELNFF----KESTGILNTIFN-SQNSLTPQKKIQSS 235
Query: 749 YYIVEGSENERLLSFWDVTVTDESTQNNNDE---PTPNKRHKRKHSAVPVQPTPMYSF 913
VE NE L S D +++ T+ N E PTP KRK V +YSF
Sbjct: 236 ERSVE---NEFLASPMDPSLSKLFTKTTNTEKISPTPFSTPKRKSKKETVFVKAIYSF 290
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +1
Query: 55 LVSMRPVPKQ*NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSYV 234
L + P + + +S +G Y + K G + IWDT+++ + E P S++ ++
Sbjct: 221 LYKLLPKENHSGVTDISWSSNGMYIAASFKKGGILIWDTQSHEVVVE-LPYSTVVALAWQ 279
Query: 235 P 237
P
Sbjct: 280 P 280
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 719 ILSLVSFNDAYYIVEGSENERLLSFWDVTVTDESTQNNNDEPTPNKRHKR 868
+ SL+SF Y IVE + R L FW + D S +P+ ++ K+
Sbjct: 358 LASLLSF-PGYAIVEEKVSWRTLEFWTTLIEDFSMSKAATDPSKDEIFKQ 406
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 752 YIVEGSENERLLSFWDVTVTDESTQNNNDEPTP---NKRHKRKHSAVPVQPTPMY 907
++ ENE LL ++ +++E + ++EP+ KR +RK+ + T MY
Sbjct: 682 FLYSDQENEDLLESFERVISEELSLLKSNEPSDISLKKRKRRKNCEKRILGTMMY 736
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 100 AMFSEDGKYYSTITKDGRLKIWDTET 177
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 419 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 514
+A +T + W + +YS + D + W+ +DG
Sbjct: 269 TAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 428 VTALDWSRKYGLYSCTKDSRVYEWN 502
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -3
Query: 1026 SMLIVMHNSXPXSSDDIQLTPSPSLSTESIALGASSST 913
S +V +S P SS LT S SLST SI +SSS+
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSS-SLSTSSIPSTSSSSS 248
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 106 FSEDGKYYSTITKDGRLKIWD 168
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 9.0
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 109 SEDGKYYSTITKDGRLKIWDTET 177
S+DG+ ++ ++D +K+WD+ T
Sbjct: 474 SKDGRIIASASQDKTIKLWDSST 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,331,709
Number of Sequences: 5004
Number of extensions: 91023
Number of successful extensions: 405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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