Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J04
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 2.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 597 FXPXKPPPPPP 565
           + P  PPPPPP
Sbjct: 187 YNPPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 2.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 591 PXKPPPPPPXP 559
           P   PPPPP P
Sbjct: 234 PLPAPPPPPPP 244


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = +2

Query: 566 GGGGGGFXGXXXXXXXXXXGVGXWGXXXXPXXXXRGPXXXGXGK-GXXXXXGGXXGXPXX 742
           GGG GGF G          G G +G          G    G G  G     GG  G P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 743 RG 748
            G
Sbjct: 247 FG 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,732
Number of Sequences: 5004
Number of extensions: 22098
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)