Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_J02
         (1147 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.42 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   2.3  
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268...    30   3.9  
03_02_0371 + 7858170-7859624                                           30   3.9  
12_01_0816 + 7502669-7503145                                           29   6.9  
08_01_0156 - 1233431-1233925                                           29   9.1  
05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364...    29   9.1  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   9.1  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -2

Query: 777 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 598
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 597 LVS 589
             S
Sbjct: 137 RAS 139


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 497 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 655
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>03_06_0528 -
           34526038-34526164,34526250-34526500,34526584-34526804,
           34526963-34527017
          Length = 217

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 764 TNPPFSPTAAPYPVTIVLSPTRLRHDLSPLAAATG--*QD*QSEVCRRCYRVLE 919
           T+P  SP AA   V+ + SP R   D+SPLAA+ G   Q+  S  C    R LE
Sbjct: 57  TSPLASPRAAANVVSPLASP-RAAGDISPLAASPGRAQQEMSSSRCTLALRRLE 109


>03_02_0371 + 7858170-7859624
          Length = 484

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 779 SPTAAPYPVTIVLSPTRLRHDLSPLAAAT 865
           SP+AAP P     SP R  H  SP AAAT
Sbjct: 67  SPSAAPAPRAAPDSPRRSLHTSSPSAAAT 95


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 796 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 665
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 750 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 577
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 576 RVSPPLT 556
           R SP ++
Sbjct: 149 RASPTVS 155


>05_04_0106 -
           18034965-18034975,18035128-18035323,18036320-18036412,
           18037219-18037264,18037411-18037538,18037892-18037959,
           18038058-18038084,18038181-18038291,18038404-18038482
          Length = 252

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 968 ADTQYCXXSVAVVRPPLQEL 909
           ADTQY    +AVVRPP Q +
Sbjct: 165 ADTQYAEIPLAVVRPPYQRV 184


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 329 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 484
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,804,884
Number of Sequences: 37544
Number of extensions: 679898
Number of successful extensions: 2132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3479804408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)