Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I23
         (1171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...   103   6e-23
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.94 
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.8  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score =  103 bits (246), Expect = 6e-23
 Identities = 49/214 (22%), Positives = 110/214 (51%), Gaps = 4/214 (1%)
 Frame = +3

Query: 141 TEYWVISAPG-DKTCQQTWDTLNNATKSGN---LSVNYKFPIPDLKVGTLDQLVGLSDDL 308
           +++W++S P    +     D +     SG+   +S    F +P  KV +LD L+  S+ L
Sbjct: 4   SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQL 63

Query: 309 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSL 488
            K D        K++  +   +      L +  M  +     Y++ F W+ +++ + +++
Sbjct: 64  TKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTI 123

Query: 489 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 668
             I+D I+ ++   + D++ + +++        N++KKQ+G+L  ++LA++V +E  +  
Sbjct: 124 SEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHG 183

Query: 669 SEYLTTLLVIVPXSMFNDWNANYXKITDMIVPXS 770
           S+YLT + + VP ++   +  +Y  +TD+++P S
Sbjct: 184 SDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRS 217


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 477 KQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKE 653
           K   +NIA +    V +I  D  V+    N +KG    L  K+   +   NL D+ K+E
Sbjct: 218 KNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQE 276


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 727 FQSLNIXLGT-MTRSVVRYSLSKMKCSFLTRSAKLRVNKLPV 605
           FQ  +  +GT   RSV  Y+LS +    L R A L+    P+
Sbjct: 176 FQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKAKDSPI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,802
Number of Sequences: 5004
Number of extensions: 60607
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)