Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I22
         (1181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    36   0.008
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    29   0.95 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   2.9  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    28   2.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   3.8  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   5.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   5.1  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +1

Query: 142 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICP 321
           +SG L K+TN   G++ RWF ++   GVLSYY       +       RG  +L  A +  
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLN--NGVLSYYKNQDDASS-----ACRGSINLKLARLVH 309

Query: 322 SDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAE 441
             +    F +         ++A      ++W+  + +  E
Sbjct: 310 DPKQPTVFQVIGKGSVRYSVKANSPVEAKKWIAAISSAIE 349


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +1

Query: 142 LSGQLYKYTNVV-KGWQQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVIC 318
           +SG L K      +G+ +R+F ++   G +SYY  +            RG+  L+ AVI 
Sbjct: 152 ISGTLLKKRRKKGQGYARRYFTLNMVEGTISYYANEN-------SSVMRGKIPLSIAVIS 204

Query: 319 PSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAEIHTKVMGANPPLQPREQLA 498
            + E   T  IN  SG  ++L    A   Q+W+    A+ +       +   +  R Q +
Sbjct: 205 VAAE---THEINVDSG--VELWNLRAHTHQDWLRWCNALEKAKNSQTSSKLVVDERTQES 259

Query: 499 VHDAMASARQQLQ 537
             + + S   +L+
Sbjct: 260 SSNQLVSIYSRLR 272


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 472  PLQPREQLAVHDAMASARQQLQATELSDAALARCIES 582
            P+   EQL VHD +      L+++E   A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 283 WPAVQAVLCLLVHHKDNKIEHQSQDQQQTIFAAIPSPHLCIYTID 149
           W A+  +    + H D+++        +   AA  +PH+ +Y I+
Sbjct: 25  WEALSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDIN 69


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 298  LAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEW 414
            L  + I  S ED+    ++C S  M KLR+T     + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +1

Query: 568 RCIESSDSPFPHTDPDLLLLKATSAASMQCLLQCLGVLHRQQQYATLTVSSKHS--DNEH 741
           RCI+ S +P P T      LK  S +  Q  +Q L      QQ A       HS  D EH
Sbjct: 48  RCIQGSFTPSPSTSFSYPFLKGKSDSPWQA-IQLLDFKSSGQQRAAYYSERYHSFRDKEH 106


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +1

Query: 475 LQPREQLAVHDAMASARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAASMQ 654
           L     L  H +   + + L+  ELS       + +S  P  + D  +LLL     A   
Sbjct: 612 LHSLSHLLHHPSTKRSHKMLEGKELSQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQL 671

Query: 655 CLLQCLGVLH 684
           C+L+     H
Sbjct: 672 CILEFQSFSH 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,155
Number of Sequences: 5004
Number of extensions: 60000
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)