Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_I22
(1181 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 47 2e-12
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 42 0.001
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 40 0.005
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 38 0.020
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 33 0.58
06_03_0226 - 18420293-18420697 32 0.77
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 31 1.8
06_01_0989 + 7672764-7672904,7673017-7673067,7673176-7673296,767... 31 1.8
12_02_0230 + 15973390-15974645,16002878-16003097 31 2.3
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167... 30 3.1
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 30 4.1
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 29 5.4
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295... 29 9.5
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 47.2 bits (107), Expect(2) = 2e-12
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +1
Query: 142 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 288
+SG LYK+ N +GW+ RWFA+ GVLSYY GP + + RG
Sbjct: 89 ISGILYKWVNYGRGWRPRWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135
Score = 44.0 bits (99), Expect(2) = 2e-12
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = +1
Query: 268 PGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAEIH 447
P +P GE HL + + S D + F+I + L LRA R WV+ L+A E+
Sbjct: 166 PRKPI-GEIHLKVSSVRESRSDDRRFSIFSGT-KRLHLRAETREDRAAWVEALQATKEMF 223
Query: 448 TKVMGANPPLQPRE-QLAVHDAMASARQQLQATELSDAALARCIESSDSPFPHTDPDLLL 624
+ M + + P + AV + RQ+LQ +S+AA+A + F L+L
Sbjct: 224 PR-MSTSEMVGPGDTAAAVAVSTERLRQRLQQEGVSEAAIADSERIVRTEFEVLHKQLML 282
Query: 625 LKATSAASMQCLLQ 666
LK + L Q
Sbjct: 283 LKQKQTLLLDTLRQ 296
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 41.5 bits (93), Expect = 0.001
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1
Query: 142 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSY 234
++G LYK+TN+ KGW+ RWFA+ GVL+Y
Sbjct: 50 VAGVLYKWTNIGKGWRPRWFAI--RGGVLAY 78
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 39.5 bits (88), Expect = 0.005
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 142 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYY--LYDGPGDT-IQPGQPAR 285
++G L+K+ N KGW+ RWF + E GVLSYY G GD+ P AR
Sbjct: 56 VAGVLHKWVNYGKGWRLRWFVL--EGGVLSYYKLRVGGGGDSAASPAVAAR 104
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 37.5 bits (83), Expect = 0.020
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 142 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSY 234
++G L+K+TN +GW++RWF++ GVLSY
Sbjct: 48 VAGVLHKWTNYGRGWRERWFSL--HDGVLSY 76
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 32.7 bits (71), Expect = 0.58
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 142 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSY 234
L G L K + ++ W +RW +DP +G + Y
Sbjct: 33 LQGPLLKRSETLRKWNERWVILDPTSGKMEY 63
>06_03_0226 - 18420293-18420697
Length = 134
Score = 32.3 bits (70), Expect = 0.77
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = -2
Query: 544 RSLVAAAWPTP----WRRGPRAALSAAGAG 467
R + AAA PT WRRGPR A SAAG G
Sbjct: 36 RVVAAAATPTTSTCGWRRGPRPAQSAAGDG 65
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 31.1 bits (67), Expect = 1.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 157 YKYTNVVKGWQQRWFAVDPETGVLSY 234
+K++ ++ W +RW +DP TG + Y
Sbjct: 25 FKFSYELRKWNERWVILDPATGKMEY 50
>06_01_0989 +
7672764-7672904,7673017-7673067,7673176-7673296,
7673406-7673510,7673963-7674024,7674398-7674515,
7674596-7674932,7675389-7675536,7675632-7675733,
7675824-7675943,7676436-7676519,7676622-7676749,
7677351-7677435,7677566-7677713,7677971-7678047,
7678187-7678243,7678423-7678561,7678642-7678796,
7679003-7679116,7679208-7679275,7679830-7679996,
7680245-7680453
Length = 911
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 145 SGQLYKYTNVVKGWQQRWFAVDPETGVLSY 234
+G L K + GW +RWF ++ ++G L Y
Sbjct: 583 AGYLLKKSAKTNGWSRRWFVLNEKSGKLGY 612
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 264 TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 380
TA+T G G SC S+ P++ L L H R RR EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449
>05_05_0060 -
22015440-22015481,22015572-22015709,22016704-22016799,
22016911-22017135
Length = 166
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 276 AGQGGGSFSCSSDMPKRRRLQDLHHK 353
AG+GG +D+P+ RRL+DL K
Sbjct: 48 AGEGGAEADADADLPELRRLRDLEAK 73
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +1
Query: 145 SGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPS 324
+G L K +K W++RWF + + G L ++ D + G RG +A +
Sbjct: 41 TGWLNKQGEYIKTWRRRWFVL--KQGRL-FWFKDA---AVTRGSVPRGVIPVATCLTVKG 94
Query: 325 DED--SKTFTINCAS-GDMLKLRATDARARQEWVDGL-RAIAEIHTKVMGA 465
ED ++ F ++ D + A + ++EW++ + R+I + V A
Sbjct: 95 AEDVINRQFAFELSTPTDTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDA 145
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -1
Query: 734 LSECLEE--TVSVAYCCWRCSTPRHCSRHCMLAADVAF 627
+ C +E T Y C+RC P H HC D F
Sbjct: 187 IQHCQQERKTPPSGYVCYRCRIPGHFIHHCPTIGDPKF 224
>07_03_0950 + 22828787-22828982,22829091-22829164,22829512-22829570,
22830148-22830487,22830623-22833376
Length = 1140
Score = 28.7 bits (61), Expect = 9.5
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Frame = +1
Query: 265 QPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAEI 444
+P + A G + A C D + + T+N +G+ L+ + D E+ D + +A +
Sbjct: 951 EPAREAVGSGGVTAGN-CVDDPFTGSSTVNPTAGEELQ-KVCDLL--YEYNDDVLGMAFV 1006
Query: 445 HTKVMGANPPLQP--REQLAVHDAMASARQQLQATELSDAALARCIESSDSPFPHTDPDL 618
K ++P L+ E ++ A+ LS A L SSD P TD +
Sbjct: 1007 AKKTSKSSPSLEVLLAESSDSEAEISDAKDTDNDAGLSSARLFSTFSSSDDEAPRTDEPI 1066
Query: 619 L 621
+
Sbjct: 1067 I 1067
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,605,229
Number of Sequences: 37544
Number of extensions: 478117
Number of successful extensions: 1705
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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