Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_I20
(1188 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 265 7e-72
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 141 1e-34
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 138 1e-33
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 136 6e-33
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 133 5e-32
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 120 3e-28
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 119 7e-28
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 115 1e-26
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 114 3e-26
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 113 5e-26
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 112 8e-26
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 112 1e-25
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 112 1e-25
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 110 3e-25
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 109 6e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 103 5e-23
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 103 5e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 101 3e-22
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 100 3e-22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 78 3e-15
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 77 4e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 77 6e-15
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 68 3e-12
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.078
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.31
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.3
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 1.7
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 28 2.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 3.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.9
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 8.9
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 265 bits (650), Expect = 7e-72
Identities = 125/204 (61%), Positives = 156/204 (76%)
Frame = +3
Query: 360 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 539
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 540 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIEL 719
PIALSG+D+LARAKNGTGKT A+ IP LE+VD KK IQ LI+VPTRELALQTSQ+C L
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTL 135
Query: 720 AKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 899
KH +++VMVTTGGT LRDDI+R+ V +++ TPGR++DL K VA +C V+DEA
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEA 195
Query: 900 DKLLSQDFKGMLDMVISRLPKERQ 971
DKLLS +F +++ ++S PK RQ
Sbjct: 196 DKLLSPEFTPIIEQLLSYFPKNRQ 219
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 141 bits (342), Expect = 1e-34
Identities = 70/174 (40%), Positives = 107/174 (61%)
Frame = +3
Query: 450 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 629
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 630 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQV 809
+D QALI+ PTRELA Q ++ + L ++ GGT +RDD+ + V V
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 810 IIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQ 971
++ TPGR+ D++ ++ D +M VLDEAD++LS+ FK + + LP Q
Sbjct: 141 VVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQ 194
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 138 bits (334), Expect = 1e-33
Identities = 73/194 (37%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Frame = +3
Query: 414 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 593
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 594 KTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGT 764
KT A+ +P+LE++ PKK T + LI+ PTRELA+Q + ++A TDI V + GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 765 NLRDDIMRIYQNVQVIIATPGRMIDLM-DKQVAKMDQCRMLVLDEADKLLSQDFKGMLDM 941
+L+ + + ++IATPGR ID M + Q ++ ++V+DEAD++L F L+
Sbjct: 369 SLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNE 428
Query: 942 VISRLPKERQSGCF 983
+I PK RQ+ F
Sbjct: 429 IIQACPKSRQTMLF 442
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 136 bits (329), Expect = 6e-33
Identities = 67/176 (38%), Positives = 107/176 (60%)
Frame = +3
Query: 444 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 623
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 624 EQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNV 803
+ +D QALI+ PTRELA+Q + + L H +++ GGT++ +DI ++
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 804 QVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQ 971
V+ TPGR+ D++ ++ + +ML+LDEAD+LL+Q FK + + LP Q
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQ 196
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 133 bits (321), Expect = 5e-32
Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 2/212 (0%)
Frame = +3
Query: 354 SIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEA 533
S +D G K+ +RR K N F+ L + LL IF+KG++ P+PIQ
Sbjct: 40 SDEDDGNYIASKLLESNRRTKGKKGNGKASN-FQSMGLNQTLLRAIFKKGFKAPTPIQRK 98
Query: 534 SIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK--KDTIQALIVVPTRELALQTSQI 707
+IP+ L G+DV+ A+ G+GKT A+ IP++E + +ALI+ P RELALQT ++
Sbjct: 99 TIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKV 158
Query: 708 CIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLV 887
+ +K TD+R + GG +L + + +++ATPGR + L + ++ +V
Sbjct: 159 VKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVV 218
Query: 888 LDEADKLLSQDFKGMLDMVISRLPKERQSGCF 983
DEAD+L F L ++ LP RQ+ F
Sbjct: 219 FDEADRLFEMGFAAQLTEILHALPTSRQTLLF 250
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 120 bits (290), Expect = 3e-28
Identities = 63/194 (32%), Positives = 110/194 (56%), Gaps = 6/194 (3%)
Frame = +3
Query: 450 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 629
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 630 VDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIY 794
++ + D L++ PTRELA+Q Q C + K + IR GG I +
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 795 QNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQS 974
+ V++ IATPGR++D++D + + LVLDEAD++L F+ + ++ ++ +RQ+
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 303
Query: 975 GCF-LQLPPECKQL 1013
F P E ++L
Sbjct: 304 VMFSATWPKEVQRL 317
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 119 bits (287), Expect = 7e-28
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Frame = +3
Query: 450 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 629
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 630 VDPKKDTIQALIVVPTRELALQTSQICIELAKH-TDIRVMVTTGGTNLRDDIMRI---YQ 797
++P + L++ TRELA Q +K+ D+R V GG N++ D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 798 NVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQDFKGMLDMVISRLPKERQ 971
+ +++ATPGR+ L+ +++ K++ + VLDE DKLL S D + + V P ++Q
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQ 231
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 115 bits (276), Expect = 1e-26
Identities = 59/189 (31%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Frame = +3
Query: 432 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 599
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 600 GAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDD 779
A+ +PV++++ A+++ PTRELA Q S+ + +R +V GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 780 IMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRL 956
+ + + V++ TPGR++D L + + + + L++DEAD+LL DF ++D ++ +
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKII 217
Query: 957 PKERQSGCF 983
P ER++ F
Sbjct: 218 PHERRTLLF 226
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 114 bits (274), Expect = 3e-26
Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Frame = +3
Query: 447 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 626
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 627 QVD---PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQ 797
++ K + L+V PTRELA+QT + L + T+++ +V GG + + R +
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAK 284
Query: 798 NVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQSG 977
N VII TPGR++DL++ Q LVLDEAD++L F+ + +IS P ++G
Sbjct: 285 NASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNG 344
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 113 bits (272), Expect = 5e-26
Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 18/223 (8%)
Frame = +3
Query: 360 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 509
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 510 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL---EQVDPKKDTIQ-----ALI 665
+PS IQ A+IP+ L KD++ A+ G+GKT A+ IP++ ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 666 VVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLM 845
+ PTRELA Q + A+ R + GG + ++ Q +++ATPGR++D +
Sbjct: 331 LAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL 390
Query: 846 DKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQS 974
++++ + QC +V+DEAD++L F+ ++ ++S LP S
Sbjct: 391 ERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNAS 433
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 112 bits (270), Expect = 8e-26
Identities = 58/159 (36%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Frame = +3
Query: 522 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 689
IQ+ IP AL G+D+L AK G+GKT A+ +P++E + KK D + AL++ PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 690 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQV-AKM 866
+QT + +++ + + GG N +++ R+ + +++ TPGR++ +D+ V
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDT 183
Query: 867 DQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQSGCF 983
+ML+LDEAD++L F+ LD ++S LP RQ+ F
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLF 222
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 112 bits (269), Expect = 1e-25
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Frame = +3
Query: 465 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 644
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 645 DTIQ-----ALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQV 809
A+I+ PTRELA+Q + C K +IR GG ++D I + + ++
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 810 IIATPGRMIDLMDK---QVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQSGC 980
++ TPGRMID++ +V + +C LVLDEAD++ F+ + +I+ + +RQ+
Sbjct: 545 VVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVL 604
Query: 981 F 983
F
Sbjct: 605 F 605
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 112 bits (269), Expect = 1e-25
Identities = 80/248 (32%), Positives = 134/248 (54%), Gaps = 11/248 (4%)
Frame = +3
Query: 261 DKFGKMMXENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 434
D+ G + EN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 435 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 593
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 594 KTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLR 773
KT A+ + +L +VD QA+ + P+RELA Q + E+ K+T+++ T G ++
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK---TAFG--IK 220
Query: 774 DDIMRIYQ-NVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVIS 950
D + + + + Q++I TPG ++DLM ++ ++ VLDEAD +L Q G M I
Sbjct: 221 DSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIK 280
Query: 951 R-LPKERQ 971
LP+ Q
Sbjct: 281 HLLPRNTQ 288
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 110 bits (265), Expect = 3e-25
Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 8/183 (4%)
Frame = +3
Query: 450 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE- 626
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 627 -----QVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMR- 788
Q+D + I AL++VPTRELA Q + +L + TN D + R
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 789 -IYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKE 965
+ ++IATP R + + V +D+ + LV+DEAD +LS + + + LP+
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRG 195
Query: 966 RQS 974
QS
Sbjct: 196 TQS 198
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 109 bits (263), Expect = 6e-25
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 6/197 (3%)
Frame = +3
Query: 399 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 578
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 579 KNGTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRV 743
K G+GKT A+ IP +E + P+ T +I+ PTRELALQ + EL K+
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKYHHQTF 192
Query: 744 MVTTGGTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQD 920
+ GG N R + ++ + V +++ATPGR++D L + + R LV+DEAD++L
Sbjct: 193 GIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIG 252
Query: 921 FKGMLDMVISRLPKERQ 971
F+ + ++ LP E +
Sbjct: 253 FEDEMRQIMKILPSENR 269
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 103 bits (247), Expect = 5e-23
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Frame = +3
Query: 459 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP 638
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 639 KKDT--IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVI 812
D +QAL+V PTRELA Q Q + +IRVM TGG ++ + ++ V+
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVV 246
Query: 813 IATPGRMIDLMDKQ--VAKMDQCRMLVLDEADKLLS----QDFKGMLDMVISRLPKERQS 974
+ATPGR+ ++++ + + LVLDEAD+LL ++ +L+++ + + +RQ+
Sbjct: 247 VATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQT 306
Query: 975 GCF 983
F
Sbjct: 307 FIF 309
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 103 bits (247), Expect = 5e-23
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Frame = +3
Query: 444 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 623
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 624 E----------QVD--------PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMV 749
VD P+K LI+ PTREL Q + + + +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 750 TTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKG 929
GG ++R I +I Q ++ ATPGR++DL+D+ + + LVLDEAD++L F+
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEP 348
Query: 930 MLDMVI 947
+ ++
Sbjct: 349 QIRHIV 354
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 101 bits (241), Expect = 3e-22
Identities = 57/164 (34%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +3
Query: 510 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 689
+P+ IQE I L G++ + AK G+GKT A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 690 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLM----DKQV 857
+Q + L + +++ + GG ++ + + + V++ATPGR+ DL+ ++ +
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148
Query: 858 AKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLP--KERQSGCF 983
A + + + LV+DEAD+LLS F LD S LP ++RQ+ F
Sbjct: 149 AGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLF 192
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 100 bits (240), Expect = 3e-22
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 13/191 (6%)
Frame = +3
Query: 450 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 629
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 630 V---DPKKDTIQALIVVPTRELALQTSQICIELAKHTD---------IRVMVTTGGTNLR 773
V D + + ALIV PTRELA Q + EL + + M G L
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 774 DDIMRIYQ-NVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVIS 950
+D+ + N V+I TPGR+ +++ +K +L+LDEAD L+ F+ L +IS
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEMLSHISSK--HLEILILDEADTLIDMGFQRTLQSIIS 180
Query: 951 RLPKERQSGCF 983
+LPK+R++G F
Sbjct: 181 QLPKQRRTGLF 191
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 77.8 bits (183), Expect = 3e-15
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 13/164 (7%)
Frame = +3
Query: 513 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVD--PKK-----DTIQALI 665
P+ IQ +P L+ KD A+ G+GKT AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 666 VVPTRELALQTSQICIELAKHTDIRVMVTT---GGTNLRDDIMRIYQNVQVIIATPGRMI 836
+ PTREL Q + +L + +V+ GG + + RI + V ++I TPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLA 281
Query: 837 D-LMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKE 965
D L + + + Q R +VLDE D+L+ F+ L ++S L +
Sbjct: 282 DHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQ 325
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 77.4 bits (182), Expect = 4e-15
Identities = 42/146 (28%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Frame = +3
Query: 540 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQICIE 716
P+ G DV A G+GKT +Y IP+++ + + ++ +++VPTREL +Q ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 717 LAKHTDIRVMVTTGGTNLRDDIMRIYQN-----VQVIIATPGRMID-LMDKQVAKMDQCR 878
++V TG +LR + ++ + + V+++TPGR++D + + + + R
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLR 287
Query: 879 MLVLDEADKLLSQDFKGMLDMVISRL 956
+V+DEAD+LL Q F+ +D V+ +
Sbjct: 288 YMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 76.6 bits (180), Expect = 6e-15
Identities = 54/185 (29%), Positives = 103/185 (55%), Gaps = 10/185 (5%)
Frame = +3
Query: 501 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDT--IQAL 662
G+EK +P+Q+ + + + ++ + +AK GTGKT A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 663 IVVPTRELALQTSQICIELAKHTDIRVMVTTGG-TNLRDDIMRIYQNVQVIIATPGRMID 839
I+ PTRELALQ + +L T IRV GG + +R++ N ++IATPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 840 -LMDKQVAKMDQCRMLVLDEADKLLSQDF-KGMLDMVISRLPKERQSGCF-LQLPPECKQ 1010
L + ++ + +LDEAD+L+ F + +L++ + + + CF +PP+
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSN 236
Query: 1011 LWKAL 1025
+++ +
Sbjct: 237 VFRGI 241
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 67.7 bits (158), Expect = 3e-12
Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Frame = +3
Query: 522 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQT 698
IQ +IP S +D+LA A G+GKT AY P+L+++ +A+IV PTREL Q
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 699 SQICIELAKHTDIRVM-VTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQC 875
+ +L+ T ++++ ++ +++ ++ + + I TP R++ + ++ ++
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKV 190
Query: 876 RMLVLDEADKLLSQDFKGMLDMVIS 950
V+DEAD+L F D ++S
Sbjct: 191 EFFVMDEADRLFEPGFIEQTDHILS 215
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.078
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +3
Query: 465 LKRELLMGIF-EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK 641
L +EL+ ++ + EK Q +I +G V+ +GK+ Y IP+L+ + +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 642 KDTIQALIVVPTRELALQTSQICIELAKH----TDIRVMVTTGGTNL--RDDIMR 788
+ A V PT+ LA + I++ + +IRV G T L R+ I+R
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIR 408
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.1 bits (67), Expect = 0.31
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 779 IISKVCASCSNHYTNVCVFCQFNTN 705
I+ CA C NH ++C+ CQ NT+
Sbjct: 36 IVVDNCAICRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 1.3
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -3
Query: 757 PVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGSTCSKTGIQ*APVLPV-PF 581
P+ ++ + ASS + V SANS T+ + +S + ST + T P+ V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST-TATSASSTPLTSVNST 365
Query: 580 LALASTSFPLRAI----GIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVSVTS 422
A +++S PL ++ AS ++ + ++++ N+S+ LP SV+S
Sbjct: 366 TATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +3
Query: 795 QNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQS 974
Q + IIA+ +I +DK + ++D A L + K + D+ E Q
Sbjct: 561 QKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYTQLRESTKKLSDLREQLHVSETQR 620
Query: 975 GCFLQLPPECKQLWKALK 1028
FL+L CK L +++
Sbjct: 621 TLFLELRQRCKNLMTSIE 638
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 806 LYILINTHYIISKVCASCSNHYTNVCVFCQFN 711
+Y LI+ + I +C+ H VC+FC F+
Sbjct: 222 VYGLISLWWAIRCICSRTKLHLVQVCLFCWFS 253
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 3.9
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +3
Query: 558 KDVLARAKNGTGKTGAYCIPVLEQVD--PKKDTIQALIVVPTRELALQTSQICIELAKHT 731
++VL G GKT + ++ + PK + + PT+ L Q + C ++
Sbjct: 87 ENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIV---FMAPTKPLVTQQMEACYKITGIP 143
Query: 732 DIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADK 905
+ +G + + YQ+ V TP +++ + + + LV+DEA +
Sbjct: 144 KSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAHR 200
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 785 AYLSKCTSDYCHTWAY 832
A L++CT DY H+W Y
Sbjct: 3007 ALLNRCTIDYYHSWDY 3022
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.2 bits (55), Expect = 8.9
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +3
Query: 504 WEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYC-----IPVLEQVDPKKDTIQALIV 668
W P P +A+ P+A + +++ + + + YC IPV K D I+ +
Sbjct: 572 WNAPIPYPDANCPMAPTYRNLTSEQEEMYEEVLKYCLELKEIPVASNSSKKTDLIELERL 631
Query: 669 VPTRELALQ 695
TRE L+
Sbjct: 632 WLTRECILR 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,904,385
Number of Sequences: 5004
Number of extensions: 75210
Number of successful extensions: 257
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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