Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I20
         (1188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      110   2e-26
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  110 bits (265), Expect = 2e-26
 Identities = 54/175 (30%), Positives = 106/175 (60%), Gaps = 9/175 (5%)
 Frame = +3

Query: 450 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 629
           FE   L+  +L  I + G++KP+P+Q+ ++PI ++G+D++A A+ G+GKT A+ +P++  
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 257

Query: 630 V-DPKKDTI--------QALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDI 782
           + +   D +        Q +IV PTREL +Q  Q  ++ + ++ ++ +V  GGT++    
Sbjct: 258 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQR 317

Query: 783 MRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVI 947
            ++     +++ATPGR++D ++K   K    + LVLDEAD++L   F   ++ ++
Sbjct: 318 GKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMV 372


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 1024 NAFHNCLHSGGSCRKQPDWRSLG 956
            N  H CL +GGSC   P  ++LG
Sbjct: 130  NESHACLSTGGSC-YWPRGKNLG 151


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 636 DQPVPKLEYNKHQFYQFH 583
           +QP P  E  + +F+ FH
Sbjct: 493 EQPTPTTESEERRFFSFH 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,476
Number of Sequences: 438
Number of extensions: 4862
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40488336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)