Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_I17
(1204 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 33 0.45
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 31 1.4
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 31 1.4
01_06_1749 - 39636951-39638102 31 2.4
03_02_0390 + 8056006-8057502 30 3.2
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 30 4.2
01_02_0029 - 10344787-10344828,10345474-10345564,10346234-103462... 30 4.2
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 29 5.5
11_01_0337 - 2519732-2521093 29 7.3
05_04_0357 + 20602830-20602848,20604210-20604250,20605770-206065... 29 9.6
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 29 9.6
>03_05_0712 -
27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 33.1 bits (72), Expect = 0.45
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 831 CSRQARQVSSKPESPQWNIEKELVELRDKDAICKHVNGSEP 953
CSR KP QW++ K LV L +DA+CK N +P
Sbjct: 447 CSRTLFMDLLKPIYQQWHLRKLLV-LAKEDAVCKRQNNHDP 486
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +3
Query: 651 GPPDHPASADRIQSLFNDIELYPTKTQVFEMLVCARQCARRKSLTLTFGEFCVFAAELRR 830
G P P +I+S+ N + K +VF + R L FGE +
Sbjct: 376 GKPVQPEDLRKIESIVN--QQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVS 433
Query: 831 CSRQARQVSSKPESPQW-NIEKEL 899
R+ + + PES +W +I EL
Sbjct: 434 VGRKVEDLLANPESKEWLSISTEL 457
>04_04_1371 + 32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +1
Query: 637 GSAAWGLPIIQHLPIASRAYSTTSNCIPLRHRYSRCWYAHDSVRVANRSLSHSENSACLQ 816
G W L + L + S AY+ S CIP ++ Y DS + + S S+ + C
Sbjct: 895 GLIPWQLTKLSSLAVFSVAYNNLSGCIPNSGQFGT--YGMDSYQGNSNLRSMSKGNICSP 952
Query: 817 LSYAGAQGKRGR 852
S AG GR
Sbjct: 953 DSGAGDLPSEGR 964
>01_06_1749 - 39636951-39638102
Length = 383
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -3
Query: 677 GRCWMIGRPHAALPSARNLLGEAGSSI--ADRGGDGGPTLRCRVYHASASPRWASLASRA 504
G W G + LPS + G + D GGD G + +V S W S +S A
Sbjct: 108 GPAWPPGEGDSTLPSCSTVFVPVGDRLYALDGGGDSGRAVSFQVLFPSGGDGWWSWSSVA 167
Query: 503 TSPA 492
++ A
Sbjct: 168 SAAA 171
>03_02_0390 + 8056006-8057502
Length = 498
Score = 30.3 bits (65), Expect = 3.2
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = -3
Query: 611 AGSSIADRGGDGGPTLRCRVYHASASPRWASL-ASRATSPAYYTNTLHYH-----*HAHI 450
A SS++ +L R + +S+SP WA L A+RA +P H H H H+
Sbjct: 55 ARSSLSLPSFSSSTSLSPRPHSSSSSPHWALLAAARAATPDGVLRLAHLHLIRELGHGHL 114
Query: 449 G-LLLSTLTAPPRHTPLGTTK 390
+ L L + P +PL K
Sbjct: 115 ARVFLCRLKSSPPASPLFALK 135
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 287 CSPCRLSLSILMNVMPTLYNKLHLLAPFFIFTIIKYEKVT 168
C P L +LM + T++ K+H++ FF+ I VT
Sbjct: 318 CGPANLFRKMLMEIKVTIWKKIHVIYNFFLIRKIIAHIVT 357
>01_02_0029 -
10344787-10344828,10345474-10345564,10346234-10346295,
10346531-10346690,10347641-10347948
Length = 220
Score = 29.9 bits (64), Expect = 4.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 981 RGILRMAEATARYRSRVYISHLYPSARRVPFQCSIEVIPACWTPASLALSTG 826
R + ++ TA+ S +I+H P +P+ CS++V+P L L TG
Sbjct: 2 RSLRILSTPTAQRSSAPFIAHCLP----LPYLCSVQVVPGIPVSHPLPLPTG 49
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 996 GCRXR-RGILRMAEATARYRSRVYISHLYPSARRVPFQCSIEVIPACWTPASLALS 832
GC R R L +A A R R + R+PF+C +E++P TP+ LAL+
Sbjct: 9 GCPPRVRPHLAPPKAKAETRRRREPAFFAHGLHRLPFRCRLELLP---TPSRLALA 61
>11_01_0337 - 2519732-2521093
Length = 453
Score = 29.1 bits (62), Expect = 7.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 820 SYAGAQGKRGRCPASRNHLNGTLKRN 897
S G Q +R RCP+S + L G L RN
Sbjct: 6 SNCGLQRRRRRCPSSDDRLEGELGRN 31
>05_04_0357 +
20602830-20602848,20604210-20604250,20605770-20606519,
20606603-20606834,20607412-20607491,20607981-20608106
Length = 415
Score = 28.7 bits (61), Expect = 9.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 835 EHRRSSAANTQNSPNVRVSDLRRAHCRAHT 746
+H + AN ++ N+ S LRR+HC ++
Sbjct: 91 DHASNGYANAKSGTNITKSSLRRSHCNQNS 120
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 692 ALDAIGRCWMIGRPHAALPSARNLLGEAGSSIADRGGDGGPTLRCRVYHASASP 531
AL+ G+ W++GR +PSA ++ RG P ++ R + SP
Sbjct: 121 ALENCGQDWLLGRRGGGIPSANVVMDRPQDPFNSRGIAVPPAVKMRNMAGNNSP 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,705,381
Number of Sequences: 37544
Number of extensions: 555643
Number of successful extensions: 1871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3678130032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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