Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I17
         (1204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    29   8.7  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    29   8.7  
AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical...    29   8.7  
AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical...    29   8.7  

>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 862 LLDTCLACLEHRRSSAANTQNSPNVRVSDLR 770
           +L+  L C E+R  +  N Q+ P ++ +D+R
Sbjct: 97  ILEDFLTCFENRVEACVNDQHGPQIQKTDIR 127


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 862 LLDTCLACLEHRRSSAANTQNSPNVRVSDLR 770
           +L+  L C E+R  +  N Q+ P ++ +D+R
Sbjct: 97  ILEDFLTCFENRVEACVNDQHGPQIQKTDIR 127


>AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12a protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 822 LRRCSRQARQVSSKPESPQWNIEKELVELRDKDAICKHVNGSEPSPP 962
           LRRCS       S+  SPQ   EKE  E  +K   C     +  +PP
Sbjct: 576 LRRCSSSRLMSKSESNSPQLPKEKE-KEKEEKKECCSSSTCNNQAPP 621


>AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12b protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 822 LRRCSRQARQVSSKPESPQWNIEKELVELRDKDAICKHVNGSEPSPP 962
           LRRCS       S+  SPQ   EKE  E  +K   C     +  +PP
Sbjct: 568 LRRCSSSRLMSKSESNSPQLPKEKE-KEKEEKKECCSSSTCNNQAPP 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,666,631
Number of Sequences: 27780
Number of extensions: 432837
Number of successful extensions: 1192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3307723186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)