Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_I15
(1051 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 291 1e-79
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 54 4e-08
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 31 0.20
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 4.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 4.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 7.7
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 7.7
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 291 bits (713), Expect = 1e-79
Identities = 129/218 (59%), Positives = 171/218 (78%)
Frame = +2
Query: 86 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLI 265
R T EEKRALDR + D Y ++R AAE HRQ R++ ++ IKPGM+M+D+ +E T R L+
Sbjct: 97 RTTDEEKRALDRQNFDQYNDLRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALV 156
Query: 266 GEDGLKAGLAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLH 445
EDGLK+G+ FPTG S NHCAAHYTPN GDTT+L+ DV+K+D G H+NGRI+D AFT+
Sbjct: 157 EEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFTMS 216
Query: 446 FNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNL 625
F+P+YD L+ V+ AT GI+ +G+D RL ++G A+QEVMES+EVE++G+ +QVK IRNL
Sbjct: 217 FDPQYDNLLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNL 276
Query: 626 NGHSIEPYKIHAGKTVPIVKGGETTRMEEXEIYAIXTF 739
GH+++PY IH GK+VPIVKGGE +MEE EI+AI TF
Sbjct: 277 CGHNLDPYIIHGGKSVPIVKGGEEIKMEEGEIFAIETF 314
Score = 30.7 bits (66), Expect = 0.36
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 738 FGSTGRGQVHXDXDWSXYXK 797
FGSTGRG VH D + S Y K
Sbjct: 314 FGSTGRGVVHEDMECSHYAK 333
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 53.6 bits (123), Expect = 4e-08
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 15/228 (6%)
Frame = +2
Query: 92 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC----EELEKTARR 259
TSE + + + + A E + K + +PG + DIC E L + ++
Sbjct: 7 TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66
Query: 260 LIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGD---TTVLEYDDVVKIDFGTHING--RII 424
+ G+AFPT S N AAH +P D L+ DVVKI G HI+G ++
Sbjct: 67 VYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLV 126
Query: 425 DCAFTLHFNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQ 604
+ P P V A A +KA+ ++ + V ++ V+ Y
Sbjct: 127 ATTTVVSEEPVTGP-AADVIAAASAALKAAQRTIKPGNTNWQVTDI-----VDKIATSYG 180
Query: 605 VKPIRNLNGHSIEPYKIHAGKTVPIVKGG------ETTRMEEXEIYAI 730
KP+ + H E I K V + +T EE E+Y +
Sbjct: 181 CKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGV 228
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Frame = +2
Query: 287 GLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLH 445
G+A PT N+CA +Y P ++ L+ DV KI G H +G + T+
Sbjct: 72 GIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIV 131
Query: 446 FNPRYDP 466
P P
Sbjct: 132 VTPPPQP 138
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 214 HARLDPIADVFSCLPVGFSSMS 149
H LD I DVFSC PV + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -3
Query: 998 GXGXPPPPXFXXGXXXGXXXXKXRAPGGXXTXGFXKXG 885
G PPPP G G PGG T F G
Sbjct: 72 GNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 125 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 232
+ D+ E+ + E+H +T +H + + P +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 7.7
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 224 DICEELEKTARRLIGEDGLKAGLAFPTGCSR--NHCAAHYTPNTGDTTVLEYDDVVKIDF 397
D +LE+ R+ + L GL+F T S N HY+P + +++ + D
Sbjct: 343 DAATKLEQFRRK----NNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDS 398
Query: 398 GTHINGRIIDCAFTLHF 448
G D T HF
Sbjct: 399 GAQYKDGTTDVTRTWHF 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,855
Number of Sequences: 5004
Number of extensions: 71018
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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