Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I12
         (1203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    42   1e-04
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    31   0.42 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   6.9  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   9.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   9.1  

>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 41/82 (50%)
 Frame = +1

Query: 436 VALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRMHT 615
           V+ ++L++C I +     +++L N   C      +  S+ +    +  I ++C Q R+H 
Sbjct: 146 VSAKSLRSCNISISNC-SSVNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHH 204

Query: 616 STKCDVYLHVTSKGIVEDCSQI 681
           ST   V+L   +  ++E+  +I
Sbjct: 205 STNLRVHLRCKTSPVIEESKEI 226


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +1

Query: 436 VALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTN--CKIVIACQQLRM 609
           V +    NCTI +KG + T+ + N +   V+   + ++  + KC+N  C+++     + M
Sbjct: 427 VQIFGCSNCTIIIKGKLNTVSMSNCKRTSVVVDTLVAAFDIAKCSNFGCQVM---NHVPM 483

Query: 610 HTSTKCD-VYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHY 729
               +CD   ++++   +  +    ++   N+   N E  Y
Sbjct: 484 IVIDQCDGGSIYLSKSSLSSEVVTSKSTSLNINVPNEEGDY 524


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 890 NXYKGILDHQSSHESILSETSKTDQFGELTSGANQLKSSKLSQLF 756
           N  + +   +S+H S L++T ++DQ    + GA +  S   S LF
Sbjct: 34  NVTRTVSGRKSNHGSSLTDTGESDQLSLKSFGAIRQPSQHRSSLF 78


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 460 CTIGLKGLMGTLHLINLE 513
           C++ LK L GTLH+ ++E
Sbjct: 345 CSVSLKSLKGTLHIPDIE 362


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +1

Query: 583 VIACQQLRMHTSTKCDVYLHVTS--KGIVEDCSQI-----RTAPYNLFYDNLEKHYESSS 741
           +I  ++L  H     DVYL + +  +G +  C+ +      T PY +    + K+Y+S S
Sbjct: 723 IILYRRLSRHQDA-LDVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLAEISKNYKSGS 781

Query: 742 LD 747
           L+
Sbjct: 782 LN 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,075,902
Number of Sequences: 5004
Number of extensions: 82787
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)