Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I10
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   3.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    28   3.0  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   3.0  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   6.8  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   6.8  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   9.0  

>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
 Frame = +2

Query: 140 MELERALEAGVSVIVIEPEPLG---EETARWIYVGNLLHKVSVYSGLCGIASGLMWNSLA 310
           M+L+     G+S   +    LG   E   +WI+V   L K+ +YS L  I      +++A
Sbjct: 1   MQLQSPFGDGISCECLNIRVLGIPNETKHQWIFVPRDLIKIKIYS-LLQICKAENCSAVA 59

Query: 311 CTPFGIVSILCSGCYTLSWQWDPCCKYQEEKNRRHIATLPM-LSDLTSASPV 463
           C    +  +   G   +S   +P   +QEE  + +I    + LS + ++ P+
Sbjct: 60  CRGCNLCILAVQGNIEIS--EEPQKLFQEENVKVYIYDSAISLSSVRASFPI 109


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 434  TLAVSLYAFDFSPLD--IYSMGPTATIVCNNQSIESIQYQRVCRLKNST 294
            T    +Y ++F+ L   +YS     TIV NNQS +++  QRV  L  ++
Sbjct: 916  TAVPGVYHYEFTKLSDSLYSDSDAVTIV-NNQSYQAVVLQRVNSLPKAS 963


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 11  PYRESFRXQIRXAGDETDSNLKPSSVAIIREVYDSENAHLKFEMELER 154
           P   SF  QI  A D +  +   +S+    E YDS  +  + +MEL+R
Sbjct: 41  PIPNSFSSQITAASDASKDDNYDASIYGFDEFYDSMKSAEREQMELKR 88


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +2

Query: 350 CYTLSWQWDPCCKYQEEKNRRHIATLPMLSDLTSASPVVLVHTDNKRKIIFHNAISIAAV 529
           CY LS  +D C +Y    N       P+     S SP  + H + K     H  I    +
Sbjct: 3   CYFLSKSYDDCSRYYIISNMAFY--FPVYD---SDSPTTVHHDERKESWRSHGFIVCLHI 57

Query: 530 GICLWRLYNT 559
             C+   YN+
Sbjct: 58  RCCICCKYNS 67


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 434 TLAVSLYAFDFSPLDIYSMGPTATIVCNNQSIESIQYQRVCR 309
           T  +++   DF   D + +      +CNNQS  S Q Q++ R
Sbjct: 394 TTGLAVVNTDFPLNDAHHLWNHLENLCNNQSFNSCQLQKITR 435


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 470 LAQQAKQKLDHSTLAVSLYAFDFSPLDIYSMGPTATIVCNNQSIESIQYQRVC 312
           L  Q  Q    S  A ++  F    ++IY++      +C N S E+  Y  +C
Sbjct: 34  LGPQEAQSAILSLAAKNMIEFSRHEIEIYNLTAEGENICANGSHEAKVYNEIC 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,646
Number of Sequences: 5004
Number of extensions: 67679
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)