Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I10
         (1197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-2|AAB71055.1|  199|Caenorhabditis elegans Hypothetical ...    31   1.6  
AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm (li...    30   3.7  
Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    29   6.5  

>AF025470-2|AAB71055.1|  199|Caenorhabditis elegans Hypothetical
           protein W10D9.1 protein.
          Length = 199

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -1

Query: 870 YCLKTFIQYYYKVTVYKM*QIYLLLTAIT-FLNYK-LRIKHFCTYLILLYNII 718
           YC+    QYY+  T++KM   YLLL  IT FL    ++IK   +Y +++Y  I
Sbjct: 117 YCVD---QYYFLRTIFKMLLDYLLLLIITAFLIIAVIKIKLKVSYFLIIYKKI 166


>AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 7 protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/70 (21%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +2

Query: 29  RXQIRXAGDETDSNLKP--SSVAIIREVYDSENAHLKFEMELERALEAGVSVIVIEPEPL 202
           +  +R   ++ +  + P  ++ A++RE+Y ++NA +     ++R    G+S + ++ + L
Sbjct: 651 KDSLRPEQNKIEKRMAPVDAAFAVLRELYHADNAPIAISNAIQRCARKGISEVALK-KCL 709

Query: 203 GEETARWIYV 232
            + TA  + V
Sbjct: 710 DQYTANGLLV 719


>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 483 LSVCTSTTGEAEVRSLNIGSVAICLRFF 400
           LS+C +   +  VRSLN+  + +CL FF
Sbjct: 282 LSLCATKNTKDLVRSLNLKCIRLCLEFF 309


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 65  SNLKPSSVAIIREVYDSENAHLKFEMELERALEAGVSVIVIEPE 196
           ++LKP     I+E  + E+ H+++E   E  +E  V+ + +EP+
Sbjct: 465 NHLKPRKNVYIKEEPEDEDYHMEYEKIPEINMEQNVNELFMEPQ 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,762
Number of Sequences: 27780
Number of extensions: 376326
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)