Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I08
         (1197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.44 
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   4.1  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    29   5.5  
12_01_0816 + 7502669-7503145                                           29   7.2  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   7.2  
08_01_0156 - 1233431-1233925                                           29   9.6  
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    29   9.6  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -2

Query: 458 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 279
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 278 LVS 270
             S
Sbjct: 137 RAS 139


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 293 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 174
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +3

Query: 288 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 461
           P S+ + +PVPTLP++   + F   G    S H +  R Y        S  G V   P  
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341

Query: 462 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYV 575
           P     + +Y   ++     + P  A     +   R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 477 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 346
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 656 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 558
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208



 Score = 28.7 bits (61), Expect = 9.6
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -2

Query: 755 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 576
           RN + AN    A+S    A     N  S       S      SSSVA   PP + L ST 
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262

Query: 575 YIPRSANPVTS 543
            +PR  NP+ +
Sbjct: 263 PVPR--NPIAA 271


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 431 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 258
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 257 RVSPPLT 237
           R SP ++
Sbjct: 149 RASPTVS 155


>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -3

Query: 745 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 623
           CL  ++PP PA +C     LPD +  T+   +  F R      VLL
Sbjct: 46  CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,586,397
Number of Sequences: 37544
Number of extensions: 694504
Number of successful extensions: 2150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)