Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_I07
         (1235 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   3.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   7.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   7.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   9.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   9.6  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 473 RRWWNLPRYPAK 508
           +RWW+ PR PA+
Sbjct: 43  KRWWSRPREPAQ 54


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 546 TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 653
           T+I  L++ P P + ANS A +LY +    Y + ++
Sbjct: 3   TAISCLVA-PFPGASANSEAKRLYDDLLSNYNRLIR 37


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +1

Query: 787 FITCILVWTFSVKI 828
           F+TCI +W + + +
Sbjct: 220 FVTCIFIWAYVIPL 233


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +1

Query: 787 FITCILVWTFSVKI 828
           F+TCI +W + + +
Sbjct: 220 FVTCIFIWAYVIPL 233


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 778 IVNFITCILVWTFSVKIYS 834
           IV  I  +L WT++ ++YS
Sbjct: 6   IVILILSLLTWTYAEELYS 24


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 778 IVNFITCILVWTFSVKIYS 834
           IV  I  +L WT++ ++YS
Sbjct: 6   IVILILSLLTWTYAEELYS 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,008
Number of Sequences: 438
Number of extensions: 5576
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42142113
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)